| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1980867 = | 134 (0.700) | 19 (0.110) | 13/140 | NT | 15.0% | intergenic (‑109/+70) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1980913 = | 98 (0.590) | intergenic (‑155/+24) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1980966‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > USA300TCH1516_ALE/1980913‑1981002 AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:3808015/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC < 1:3586329/91‑1AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC < 1:339692/91‑1AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 2:3148251/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 2:3149957/1‑91 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 1:2202153/91‑1 TGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCAT < 2:1224203/91‑1 TGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCAT < 2:252494/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 2:2617103/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:524219/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:524742/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 2:1630246/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:2112893/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:1138950/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:197485/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:1429635/91‑1 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG < 1:787030/91‑1 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG > 1:3884683/1‑91 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGGTTCGAGAGGTGAGGCATCG < 2:3394392/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC > 1:1123436/1‑91 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC > 1:152878/1‑91 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC < 2:1677780/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC < 1:2280350/91‑1 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT < 2:3683069/91‑1 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 2:3747494/1‑91 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 2:3188716/1‑91 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT > 1:3117827/1‑91 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT < 1:3570347/91‑1 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT > 2:3505843/1‑91 GAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT > 2:3412184/1‑91 AGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTAT > 2:1414492/1‑91 AGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATA > 1:3704713/1‑91 AGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATA > 1:3704730/1‑91 TAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGT > 2:3643028/1‑91 AAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAGAGTATATAGGCCTAGATATGTACTA > 1:3597445/1‑91 AAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTA > 1:2863871/1‑91 AAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTA > 1:1258965/1‑91 AATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAA > 1:494397/1‑91 ATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAT > 1:1054038/1‑91 ATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAT > 1:1379263/1‑91 ATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAT > 1:1376674/1‑91 TAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATT > 2:3394741/1‑91 AAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCT > 1:3428557/1‑91 AAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCT > 1:252736/1‑91 AAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTT > 1:2058603/1‑91 GCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTA > 1:474522/1‑91 CGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAACTCTTCTTTAG > 1:224913/1‑91 ATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCA > 2:399304/1‑91 TGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAT > 1:808974/1‑91 TAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTT > 2:1528565/1‑91 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 1:2051577/91‑1 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC > 2:445772/1‑91 CGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAT < 2:2566958/91‑1 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTT > 2:1288349/1‑91 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTT < 2:2167618/91‑1 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTT < 2:2167146/91‑1 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCA > 1:505903/1‑88 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCA < 2:505903/88‑1 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT < 2:725835/91‑1 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 1:2216893/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 1:2216548/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 1:2659983/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 2:1667826/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 2:3280023/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 1:1826081/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 1:1721637/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG < 1:2964881/91‑1 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTA < 2:3839201/90‑1 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTA < 2:3839304/90‑1 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTA > 1:3839201/1‑90 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTA > 1:3839304/1‑90 TATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA < 2:916006/91‑1 AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1980966‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > USA300TCH1516_ALE/1980913‑1981002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |