| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1980867 = | 134 (0.700) | 19 (0.110) | 13/140 | NT | 15.0% | intergenic (‑109/+70) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1980913 = | 98 (0.590) | intergenic (‑155/+24) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
Only 100 of 204 total aligned reads displayed.
TAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAA > USA300TCH1516_ALE/1980823‑1981003 | agaattagtacatatctaggcctatatacttttaataaataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttat > 2:1414492‑M2/90‑91 (MQ=255) aTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt > 2:787461/1‑91 (MQ=255) aTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt < 1:173947/91‑1 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACGTCGCTtttattat > 2:1402364/1‑91 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat > 2:948288/1‑91 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 2:3773046/91‑1 (MQ=255) attagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat > 1:1054038‑M1/41‑91 (MQ=255) aaTTTCACTTTCTGCTCAATTTATTGTTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 1:1149900/90‑1 (MQ=255) ttagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt > 1:494397‑M1/40‑91 (MQ=255) aTTTCTCTTTGTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt < 2:3567860/91‑1 (MQ=255) aTTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt < 2:1575791/91‑1 (MQ=255) tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt < 2:1495836/91‑1 (MQ=255) tagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt > 1:2863871‑M1/39‑91 (MQ=255) ttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattta > 2:2341761/1‑91 (MQ=255) acatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta > 2:3643028‑M1/35‑91 (MQ=255) aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta < 2:695012/91‑1 (MQ=255) cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaa < 1:3822625/91‑1 (MQ=255) ttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaaa < 1:720583/91‑1 (MQ=255) tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg > 2:2687200/1‑91 (MQ=255) cTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCCTTTATTATTTATTAAAAGtaat > 2:1537767/1‑89 (MQ=255) aggcctatatacttttaataaataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGtata > 1:3704730‑M2/73‑91 (MQ=255) aggcctatatacttttaataaataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGtata > 1:3704713‑M2/73‑91 (MQ=255) tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatat > 1:2163989/1‑91 (MQ=255) tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatat < 2:2090451/91‑1 (MQ=255) aaTTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg > 2:1719761/1‑91 (MQ=255) aTTTATTATTAGTTTACGTACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAgg < 2:1131976/91‑1 (MQ=255) aTTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAgg > 1:1825215/1‑91 (MQ=255) tattattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt > 2:2197118/1‑91 (MQ=255) attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa < 2:3312431/91‑1 (MQ=255) attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa > 1:3460647/1‑91 (MQ=255) ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg < 2:1289592/91‑1 (MQ=255) attaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGat < 1:419024/91‑1 (MQ=255) tttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa < 1:2502268/91‑1 (MQ=255) ttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc < 2:1607575/91‑1 (MQ=255) ttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc < 2:1013548/91‑1 (MQ=255) tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt < 1:1247842/91‑1 (MQ=255) aaataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAGAGTATATAGGCCTAGATATGTACTa > 1:3597445‑M2/54‑91 (MQ=255) aaataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa > 1:1258965‑M2/54‑91 (MQ=255) ataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt > 1:1379263‑M2/52‑91 (MQ=255) ataataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt > 1:1376674‑M2/52‑91 (MQ=255) tacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAtt < 2:1918544/91‑1 (MQ=255) tacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAtt > 1:2659387/1‑91 (MQ=255) taataaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAtt > 2:3394741‑M2/51‑91 (MQ=255) acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttc > 1:3624575/1‑91 (MQ=255) aaaaaGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttctt > 1:2011570/1‑91 (MQ=255) AAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttcttc > 2:3412184‑M1/1‑91 (MQ=255) aaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct > 1:252736‑M2/46‑91 (MQ=255) aaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct > 1:3428557‑M2/46‑91 (MQ=255) AAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct > 1:3117827‑M1/1‑91 (MQ=255) AAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct > 2:3505843‑M1/1‑91 (MQ=255) aagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTcttctt > 1:2058603‑M2/45‑91 (MQ=255) AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt < 2:3683069‑M1/91‑1 (MQ=255) AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt > 2:3188716‑M1/1‑91 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa > 1:152878‑M1/1‑91 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa < 1:2280350‑M1/91‑1 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa > 1:1123436‑M1/1‑91 (MQ=255) CGATGCCTCACCTCTCGAACCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAg < 2:3394392‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:524742‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:197485‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 2:1630246‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:1429635‑M1/91‑1 (MQ=255) ATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCa < 2:252494‑M1/91‑1 (MQ=255) tgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt > 1:808974‑M2/39‑91 (MQ=255) GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt > 2:3148251‑M1/1‑91 (MQ=255) GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt < 1:3586329‑M1/91‑1 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt > 2:3251252/1‑91 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt < 2:2881691/91‑1 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt < 1:521483/91‑1 (MQ=255) tCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt > 2:2289971/1‑91 (MQ=255) aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt < 1:2380542/91‑1 (MQ=255) aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt < 2:3586329/91‑1 (MQ=255) ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa < 2:2242980/91‑1 (MQ=255) ctcGAAAAAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa < 1:3190831/91‑1 (MQ=255) cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt > 2:96852/1‑91 (MQ=255) cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt < 2:2440525/91‑1 (MQ=255) aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg > 2:385356/1‑91 (MQ=255) aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg > 2:201352/1‑91 (MQ=255) aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg < 1:2232409/91‑1 (MQ=255) aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt < 2:2739996/91‑1 (MQ=255) ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTc > 1:1041247/1‑91 (MQ=255) ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTc > 2:1236404/1‑91 (MQ=255) gtgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCa > 2:2728665/1‑91 (MQ=255) tgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAg < 1:842404/91‑1 (MQ=255) gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc > 1:2070962/1‑91 (MQ=255) gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc < 1:2770926/91‑1 (MQ=255) ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc < 1:3221843/91‑1 (MQ=255) ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc < 1:1427374/91‑1 (MQ=255) tACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtct < 2:2567220/91‑1 (MQ=255) aCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc > 1:2618737/1‑91 (MQ=255) atcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc > 2:445772‑M2/10‑91 (MQ=255) cttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCa > 1:505903‑M2/6‑88 (MQ=255) cttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAttt < 2:2167146‑M2/86‑1 (MQ=255) ttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtttt > 1:2216548‑M2/5‑91 (MQ=255) ttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtttt > 2:1667826‑M2/5‑91 (MQ=255) ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTa < 2:3839201‑M2/88‑1 (MQ=255) ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTa > 1:3839304‑M2/3‑90 (MQ=255) ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg < 1:2964881‑M2/89‑1 (MQ=255) tATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGa < 2:916006‑M2/90‑1 (MQ=255) attatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGaa > 2:2120631/1‑91 (MQ=255) attatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGaa < 1:787461/91‑1 (MQ=255) | TAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAA > USA300TCH1516_ALE/1980823‑1981003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |