| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2008942 = | 127 (0.670) | 12 (0.080) | 7/132 | NT | 9.9% | intergenic (+70/+121) | USA300HOU_RS10115/USA300HOU_RS10125 | hypothetical protein/Putative multidrug export ATP‑binding/permease protein |
| ? | USA300TCH1516_ALE | 2008991 = | 115 (0.730) | intergenic (+119/+72) | USA300HOU_RS10115/USA300HOU_RS10125 | hypothetical protein/Putative multidrug export ATP‑binding/permease protein | |||||
TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2009045‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCT > USA300TCH1516_ALE/2008991‑2009080 TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT < 2:705070/91‑1TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 2:471390/1‑91TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGACTTTCTTAATTGAAAATAAT > 2:1107407/1‑91 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATTGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC < 1:1457497/91‑1 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC < 1:1458193/91‑1 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC < 1:2124263/91‑1 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC < 1:2124750/91‑1 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT > 1:12015/1‑91 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT > 2:1702615/1‑91 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT < 1:3329807/91‑1 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT > 1:3684182/1‑91 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAAAATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT < 2:3175555/91‑1 AGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTT < 2:397286/91‑1 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA > 1:821774/1‑91 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA > 1:822368/1‑91 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA > 1:822732/1‑91 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA > 1:903642/1‑91 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA > 1:3730581/1‑91 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA > 1:1785609/1‑91 TACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTAC > 2:3672023/1‑91 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT < 1:511306/91‑1 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT > 1:2060005/1‑91 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT > 1:2063048/1‑91 CAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG > 1:996310/1‑91 CAATCGTGAAGAGAAAATTTGTAACGGGATGGTGGGGTCGTAACATAGAAAAAACAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG < 1:3612736/91‑1 AATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGC > 2:2012461/1‑91 ATCTTGAAGAGAAGATTGGTAACAGGATGGTGGGGTCATAACATAGAAGAAGCAGTGATATATTTTCTTAATTGAAAATAATCTTACTGCT < 2:463479/91‑1 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT < 2:2392147/91‑1 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT < 1:637783/91‑1 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT < 2:796359/91‑1 CTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTT > 1:519034/1‑91 TTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT < 1:1693587/91‑1 TTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT < 1:819305/91‑1 TTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT > 1:377512/1‑91 TGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT < 2:996310/91‑1 TGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT > 2:117864/1‑91 TGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT > 1:2682006/1‑91 AAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGA > 2:299476/1‑91 AGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAT > 1:3693071/1‑91 CAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTG > 1:3237021/1‑91 AGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGT > 1:1854002/1‑91 AGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGT > 1:2211047/1‑91 AGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGT > 1:2213677/1‑91 GTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTA > 2:3565072/1‑91 TAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAC > 1:3512581/1‑91 TAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAC > 2:1300713/1‑91 TAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAC > 2:1836811/1‑91 TAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAC > 2:2590634/1‑91 TTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTA < 1:605588/91‑1 CTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAA > 1:660302/1‑91 CTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAA > 1:3507711/1‑91 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG < 2:348164/91‑1 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG < 2:1152191/91‑1 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG > 1:991647/1‑91 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGT > 1:785390/1‑91 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 2:3872574/91‑1 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT > 1:1501538/1‑91 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 1:2750976/91‑1 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT > 1:1502256/1‑91 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT > 1:1501221/1‑91 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 1:2016659/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 1:2016671/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 1:2017764/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 1:1843582/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 2:2677001/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 1:390891/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCACTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 2:1294733/91‑1 TGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTT < 1:120517/91‑1 TTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAA < 1:1254305/91‑1 TTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGCCAAACCACTAATACTTTATAAGTTTTGAA > 1:1355883/1‑91 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAAT > 1:2797977/1‑91 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAAT < 1:1139139/91‑1 TTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATG > 2:738494/1‑91 TCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCT > 1:1650491/1‑91 TCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCT < 1:1826627/91‑1 TCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCT > 1:1864301/1‑91 TCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCT > 1:955165/1‑91 TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2009045‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCT > USA300TCH1516_ALE/2008991‑2009080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |