BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2008942 =	127 (0.670)	12 (0.080)	7/132	NT	9.9%	intergenic (+70/+121)	USA300HOU_RS10115/USA300HOU_RS10125	hypothetical protein/Putative multidrug export ATP‑binding/permease protein
*	?	USA300TCH1516_ALE	2008991 =	115 (0.730)	12 (0.080)	7/132	NT	9.9%	intergenic (+119/+72)	USA300HOU_RS10115/USA300HOU_RS10125	hypothetical protein/Putative multidrug export ATP‑binding/permease protein

Only 100 of 228 total aligned reads displayed.

ACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTA  >  USA300TCH1516_ALE/2008901‑2009081

    tGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATg                                                                                        >  2:2151186/1‑91 (MQ=255)

    tGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATg                                                                                        >  2:2210358/1‑91 (MQ=255)

    tGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATg                                                                                        >  1:193700/1‑91 (MQ=255)

     gagaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGt                                                                                       <  1:1149650/91‑1 (MQ=255)

       gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTa                                                                                     >  1:2338097/1‑91 (MQ=255)

        aTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTAt                                                                                    <  1:451744/91‑1 (MQ=255)

         tAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAATGCCCTTACTGATTTTTCTATGTTATg                                                                                   >  2:3356765/1‑91 (MQ=39)

         tAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATg                                                                                   >  2:822368/1‑91 (MQ=255)

           aaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGAc                                                                                 >  2:1913183/1‑91 (MQ=255)

           aaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGAc                                                                                 >  1:3355318/1‑91 (MQ=255)

           aaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGAc                                                                                 <  2:237731/91‑1 (MQ=255)

                atatTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCccac                                                                            >  1:196581/1‑91 (MQ=255)

                 tatTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCccacc                                                                           <  1:2779079/91‑1 (MQ=255)

                    tGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATc                                                                        >  2:3461721/1‑91 (MQ=255)

                    tGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATCAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATc                                                                        >  1:3084821/1‑91 (MQ=255)

                      aaTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCt                                                                      >  2:752982/1‑91 (MQ=255)

                       aTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTg                                                                     >  2:2510173/1‑91 (MQ=255)

                       aTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTg                                                                     >  1:69046/1‑91 (MQ=255)

                       aTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTg                                                                     <  2:848538/91‑1 (MQ=255)

                        tctcGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGt                                                                    >  1:2386166/1‑91 (MQ=255)

                         ctcGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGtt                                                                   <  2:3241252/91‑1 (MQ=255)

                           cGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTAc                                                                 <  1:1621399/91‑1 (MQ=255)

                           cGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTAc                                                                 >  1:2939508/1‑91 (MQ=255)

                            gAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACa                                                                <  1:2412879/91‑1 (MQ=255)

                            gAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACa                                                                <  1:3844889/91‑1 (MQ=255)

                             aaattaaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACaa                                                               <  1:2673286/91‑1 (MQ=255)

                              aattaacttTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACaaa                                                              >  1:3016471/1‑91 (MQ=255)

                              aattaaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACaaa                                                              >  2:2750976/1‑91 (MQ=255)

                                ttaaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtt                                                            <  2:2053756/91‑1 (MQ=255)

                                ttaaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtt                                                            <  1:762407/91‑1 (MQ=255)

                                   aattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtc                                                         >  2:1315063/1‑91 (MQ=255)

                                    attTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtct                                                        >  2:3129936/1‑91 (MQ=255)

                                     tttAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtctc                                                       >  2:1407411/1‑91 (MQ=255)

                                      ttAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTctct                                                      <  2:496319/91‑1 (MQ=255)

                                        aaaaaaGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACTCCACAATCCTGTTACAAATTTTCTCTTc                                                    >  2:1430603/1‑91 (MQ=255)

                                        aaaaaaGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTc                                                    <  1:2034815/91‑1 (MQ=255)

                                        aaaaaaGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTACTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTc                                                    <  2:2944748/91‑1 (MQ=255)

                                         AAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCa                                                   >  2:117864‑M1/1‑91 (MQ=255)

                                          AAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCaa                                                  <  1:819305‑M1/91‑1 (MQ=255)

                                           AAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAg                                                 >  1:519034‑M1/1‑91 (MQ=255)

                                            aagcagtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGa                                                >  2:299476‑M2/47‑91 (MQ=255)

                                             agcagtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAt                                               >  1:3693071‑M2/46‑91 (MQ=255)

                                              GCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAtt                                              >  2:2012461‑M1/1‑91 (MQ=255)

                                               CAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTg                                             >  1:996310‑M1/1‑91 (MQ=255)

                                                AGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGt                                            >  1:2063048‑M1/1‑91 (MQ=255)

                                                 gtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTa                                           >  2:3565072‑M2/42‑91 (MQ=255)

                                                  taagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAc                                          >  1:3512581‑M2/41‑91 (MQ=255)

                                                  taagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAc                                          >  2:1300713‑M2/41‑91 (MQ=255)

                                                  TAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAc                                          >  1:822732‑M1/1‑91 (MQ=255)

                                                  TAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAc                                          >  1:903642‑M1/1‑91 (MQ=255)

                                                  TAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAc                                          >  1:1785609‑M1/1‑91 (MQ=255)

                                                   AAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACt                                         <  2:397286‑M1/91‑1 (MQ=255)

                                                    AGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATTTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTg                                        <  2:3175555‑M1/91‑1 (MQ=255)

                                                    AGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTg                                        >  1:12015‑M1/1‑91 (MQ=255)

                                                    AGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTg                                        >  2:1702615‑M1/1‑91 (MQ=255)

                                                    AGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTg                                        >  1:3684182‑M1/1‑91 (MQ=255)

                                                     GATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGa                                       <  1:1458193‑M1/91‑1 (MQ=255)

                                                     GATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGa                                       <  1:2124750‑M1/91‑1 (MQ=255)

                                                      ATTATTTTCAATTAAGAAAGTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGaa                                      >  2:1107407‑M1/1‑91 (MQ=255)

                                                      ATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGaa                                      >  2:471390‑M1/1‑91 (MQ=255)

                                                      ATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGaa                                      <  2:705070‑M1/91‑1 (MQ=255)

                                                       ttattTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAg                                     <  1:349253/91‑1 (MQ=255)

                                                        tattTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGt                                    <  1:1378535/91‑1 (MQ=255)

                                                           tttCAATTAAGATAATCTCGTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAGTGTTCTCTTCAAGATTGTACTGAAGTCaa                                 <  2:3679426/91‑1 (MQ=255)

                                                             tCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaac                               <  2:1517602/91‑1 (MQ=255)

                                                             tCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaac                               <  2:2642200/91‑1 (MQ=255)

                                                               aaTTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaacaa                             <  2:54850/91‑1 (MQ=255)

                                                                aTTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaacaac                            <  1:635366/91‑1 (MQ=255)

                                                                 ttAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACt                           <  1:2669901/91‑1 (MQ=255)

                                                                 ttAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACt                           >  1:191093/1‑91 (MQ=255)

                                                                 ttAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACt                           <  2:3349334/91‑1 (MQ=255)

                                                                  ttgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTa                          <  1:605588‑M2/67‑1 (MQ=255)

                                                                  tAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTa                          <  2:2296152/91‑1 (MQ=255)

                                                                   aaGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTaa                         >  1:1988833/1‑91 (MQ=255)

                                                                     gAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATa                       >  1:1673431/1‑91 (MQ=255)

                                                                       aaaTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACt                     >  2:2233828/1‑91 (MQ=255)

                                                                        aaTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACtt                    <  1:3145824/91‑1 (MQ=255)

                                                                        aaTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACtt                    <  1:930755/91‑1 (MQ=255)

                                                                        aaTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACtt                    <  2:3484635/91‑1 (MQ=255)

                                                                        aaTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACtt                    <  1:3292811/91‑1 (MQ=255)

                                                                         aTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                   <  2:885732/91‑1 (MQ=255)

                                                                         aTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                   <  2:3375886/91‑1 (MQ=255)

                                                                         aTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                   <  2:3069654/91‑1 (MQ=255)

                                                                          tctcTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTta                  >  1:3413331/1‑91 (MQ=255)

                                                                           ctctTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTtat                 >  1:3771728/1‑91 (MQ=255)

                                                                              ttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAg              >  1:991647‑M2/13‑91 (MQ=255)

                                                                                actgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGtt            >  1:1502256‑M2/11‑91 (MQ=255)

                                                                                actgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGtt            >  1:1501221‑M2/11‑91 (MQ=255)

                                                                                 ctgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt           <  1:390891‑M2/82‑1 (MQ=255)

                                                                                 ctgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt           <  1:2016671‑M2/82‑1 (MQ=255)

                                                                                 ctgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt           <  1:1843582‑M2/82‑1 (MQ=255)

                                                                                     tttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGaa       <  1:1254305‑M2/86‑1 (MQ=255)

                                                                                      ttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAAt      <  1:1139139‑M2/87‑1 (MQ=255)

                                                                                       tttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATg     >  2:738494‑M2/4‑91 (MQ=255)

                                                                                         tCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCt   >  1:1864301‑M2/2‑91 (MQ=255)

                                                                                         tCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCt   >  1:955165‑M2/2‑91 (MQ=255)

                                                                                         tCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCt   >  1:1650491‑M2/2‑91 (MQ=255)

                                                                                          cTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCta  <  2:1341596/91‑1 (MQ=255)

                                                                                          cTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCta  >  2:1981361/1‑91 (MQ=255)

                                                                                          cTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCta  <  1:2729011/91‑1 (MQ=255)

ACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTA  >  USA300TCH1516_ALE/2008901‑2009081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.