| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2057471 | 169 (0.890) | 26 (0.170) | 10/132 | NT | 14.5% | intergenic (+228/+64) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2057483 | 167 (1.070) | intergenic (+240/+52) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein | |||||
AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2057368‑2057471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctattcaaagtTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAA < USA300TCH1516_ALE/2057483‑2057394 AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATA > 1:2049544/1‑91AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATA > 1:2048916/1‑91AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGAGCGAGCATCTTGCATGTATAAACAAATA < 1:1154165/91‑1 TATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGG > 2:1806125/1‑91 TTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCT < 2:2613745/91‑1 TAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCGTCTTGCATGTATAAACAAATAGGCTA < 2:3093526/91‑1 TAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTA > 1:2620377/1‑91 AAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTAT < 1:1346936/91‑1 GAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTC < 2:3774483/91‑1 AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCA > 2:676875/1‑91 AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCA > 1:1892717/1‑91 AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCA > 1:458014/1‑91 AACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCA < 1:981612/91‑1 CCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAA < 1:3215894/91‑1 CCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAA > 1:2698964/1‑91 CCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAA > 1:2698098/1‑91 CCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAA < 2:1482703/91‑1 CCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAA > 1:101319/1‑91 CCCCCAGCATATGCGTTATATAGCGTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAA < 2:3864644/91‑1 CCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAG > 2:2110839/1‑91 CCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAG < 2:2794544/91‑1 CCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAG > 1:3226209/1‑91 CCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGT > 2:721579/1‑91 CCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGT > 1:415575/1‑91 TATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTA < 2:2502689/91‑1 TATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCGTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTA < 2:2502441/91‑1 TGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAAT > 2:3237327/1‑91 TGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAAT > 2:1298191/1‑91 TTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTA < 2:3527617/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAGTATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 2:1159210/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 2:3540727/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 1:2635938/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 1:817042/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 1:817737/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 2:2764488/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 1:3590419/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 2:3749528/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 2:2711380/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 2:2764689/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 2:2755004/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 2:2754841/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 1:2640038/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 1:709917/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGC < 1:1298191/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGC < 1:979707/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGC < 1:978080/91‑1 GCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGC < 1:3237327/91‑1 GTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTG < 1:3272194/91‑1 TACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACA < 1:1985829/91‑1 TATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAA < 2:541459/91‑1 AGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCA > 2:2937772/1‑91 AGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCA > 2:2938351/1‑91 AGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCA < 1:3587313/91‑1 GGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAG < 1:3505141/91‑1 GCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGC < 1:1662724/91‑1 GCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGC < 1:3347758/91‑1 ATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAG < 1:1785942/91‑1 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC > 2:1115272/1‑91 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC > 1:1483379/1‑91 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATAT > 2:3853774/1‑68 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATAT < 1:3853774/68‑1 TCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCT < 1:1325779/91‑1 TCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCT > 1:2215617/1‑91 TCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCT < 1:212432/91‑1 TCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCT > 1:2215924/1‑91 CAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTA < 2:1393867/91‑1 CAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTA > 1:2260569/1‑91 AAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTAT < 2:103380/91‑1 AAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTAT < 1:2853354/91‑1 AAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTAT < 1:2854331/91‑1 AAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATA > 1:1401237/1‑91 AAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATA < 1:374378/91‑1 AGTTTGAGTAATTTTCCTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATAT > 2:1739072/1‑91 AGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATAT > 1:297552/1‑91 AGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATAT > 2:3283877/1‑91 AGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATAT > 2:57455/1‑91 TTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAc > 2:2354465/1‑90 AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2057368‑2057471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctattcaaagtTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAA < USA300TCH1516_ALE/2057483‑2057394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |