BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2057471	169 (0.890)	26 (0.170)	10/132	NT	14.5%	intergenic (+228/+64)	USA300HOU_RS10370/USA300HOU_RS10375	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2057483	167 (1.070)	26 (0.170)	10/132	NT	14.5%	intergenic (+240/+52)	USA300HOU_RS10370/USA300HOU_RS10375	hypothetical protein/hypothetical protein

Only 100 of 250 total aligned reads displayed.

TTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGATG  >  USA300TCH1516_ALE/2057393‑2057573

tttATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCaa                                                                                            >  2:1514134/1‑91 (MQ=255)

  tatataGCTAGCTGGGGGTTTCTCATACAATATGGATAGAGCATCTTGCATGTATACACAAATAGGCTATTAAAAGTAAAATTAATCAAAc                                                                                          >  2:2664331/1‑91 (MQ=255)

   atataGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAact                                                                                         >  2:57455‑M2/1‑88 (MQ=255)

    tataGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactt                                                                                        >  1:1401237‑M2/1‑87 (MQ=255)

       aGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttga                                                                                     >  1:2215617‑M2/1‑84 (MQ=255)

       aGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttga                                                                                     <  1:212432‑M2/91‑8 (MQ=255)

        gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaa                                                                                    >  1:1483379‑M2/1‑83 (MQ=255)

            gCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaatagc                                                                                <  1:1662724‑M2/91‑13 (MQ=255)

              tGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaatagcct                                                                              >  2:2937772‑M2/1‑77 (MQ=255)

               gggggTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt                                                                             <  2:1882442/91‑1 (MQ=255)

                 gggTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTc                                                                           >  2:112087/1‑91 (MQ=255)

                 gggTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTc                                                                           <  1:1372248/91‑1 (MQ=255)

                 gggTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTc                                                                           >  2:409086/1‑91 (MQ=255)

                  ggTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc                                                                          >  2:1587421/1‑91 (MQ=255)

                  ggTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc                                                                          <  2:3673532/91‑1 (MQ=255)

                   gTTTCTCATACAATATGTATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct                                                                         <  1:3330713/91‑1 (MQ=255)

                   gTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct                                                                         <  1:2181872/91‑1 (MQ=255)

                   gTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct                                                                         >  2:645500/1‑91 (MQ=255)

                   gTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCct                                                                         >  1:2532585/1‑91 (MQ=255)

                     ttCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCctct                                                                       >  1:3572673/1‑91 (MQ=255)

                        tcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCa                                                                    <  2:2185294/91‑1 (MQ=255)

                        tcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCa                                                                    <  2:3277875/91‑1 (MQ=255)

                         cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa                                                                   >  2:3095410/1‑91 (MQ=255)

                         cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa                                                                   <  1:1962616/91‑1 (MQ=255)

                         cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa                                                                   <  2:144319/91‑1 (MQ=255)

                         cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa                                                                   <  1:3003613/91‑1 (MQ=255)

                         cATACAATATGGATCGAGCATCTTGCAGGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTGGAATAGCCTTTCCGCTTCaa                                                                   <  2:592785/91‑1 (MQ=255)

                          aTACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaaa                                                                  <  1:97425/91‑1 (MQ=255)

                          aTACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaaa                                                                  <  2:3318712/91‑1 (MQ=255)

                          aTACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaaa                                                                  >  2:3868070/1‑91 (MQ=255)

                           tACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAAt                                                                 <  2:1198717/91‑1 (MQ=255)

                           tACAATATGCATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAAt                                                                 <  1:3483629/91‑1 (MQ=255)

                             cAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAg                                                               <  2:2698964/91‑1 (MQ=255)

                             cAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAg                                                               <  2:1294130/91‑1 (MQ=255)

                               atatGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaa                                                                                    <  1:3853774‑M2/68‑9 (MQ=255)

                                 atGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtt                                                           <  1:902668/91‑1 (MQ=255)

                                 atGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtt                                                           >  1:551881/1‑91 (MQ=255)

                                  tGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCttt                                                          <  2:1785942/91‑1 (MQ=255)

                                    gATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttat                                                        >  1:1290684/1‑91 (MQ=255)

                                     aTCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttatt                                                       >  2:1915997/1‑91 (MQ=255)

                                     aTCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttatt                                                       <  1:2831779/91‑1 (MQ=255)

                                       cGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattta                                                     >  1:3815149/1‑91 (MQ=255)

                                       cGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattta                                                     <  1:700992/91‑1 (MQ=255)

                                       cGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattta                                                     <  1:3227801/91‑1 (MQ=255)

                                         aGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTaaa                                                   >  2:133652/1‑91 (MQ=255)

                                            aTCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTg                                                >  1:585919/1‑91 (MQ=255)

                                             tCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTgg                                               >  1:2618010/1‑91 (MQ=255)

                                               ttGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAt                                             <  1:2715942/91‑1 (MQ=255)

                                               ttGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTAAAATTGGAt                                             <  2:1117165/91‑1 (MQ=255)

                                                tGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAtt                                            >  1:3596189/1‑91 (MQ=255)

                                                 gCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTa                                           >  1:3735726/1‑91 (MQ=255)

                                                  cATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTAt                                          >  1:2892662/1‑91 (MQ=255)

                                                   aTGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATg                                         <  2:1037828/91‑1 (MQ=255)

                                                    tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt                                        >  2:2129296/1‑91 (MQ=255)

                                                    tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGCATTATGt                                        >  1:1942442/1‑91 (MQ=255)

                                                       ataAACAAATATGCAATTCAAAGTAGAATAACTCAAACTTTGAATAGCCTTTCCTCGTCAAATAGTCTTTATTTATATTGTATTATGTTAt                                     <  2:1679287/91‑1 (MQ=255)

                                                       ataAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt                                     <  2:1087555/91‑1 (MQ=255)

                                                       ataAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt                                     <  2:2364734/91‑1 (MQ=255)

                                                       ataAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt                                     <  2:2436202/91‑1 (MQ=255)

                                                       ataAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt                                     >  2:1709802/1‑91 (MQ=255)

                                                        taAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAtt                                    >  1:788243/1‑91 (MQ=255)

                                                        taAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAtt                                    <  1:103380/91‑1 (MQ=255)

                                                          aaCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTgg                                  >  2:2589636/1‑91 (MQ=255)

                                                          aaCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTgg                                  >  1:1117756/1‑91 (MQ=255)

                                                          aaCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTgg                                  >  1:2792485/1‑91 (MQ=255)

                                                           aCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGa                                 >  1:1272605/1‑91 (MQ=255)

                                                              aaTAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGAttt                              >  1:2304064/1‑91 (MQ=255)

                                                              aaTAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGAttt                              >  1:2647163/1‑91 (MQ=255)

                                                              aaTAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGAttt                              >  1:3266839/1‑91 (MQ=255)

                                                                tAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTATCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTc                            >  1:3369264/1‑91 (MQ=255)

                                                                 aGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCt                           <  1:2150051/91‑1 (MQ=255)

                                                                  ggCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCtt                          >  2:3356724/1‑91 (MQ=255)

                                                                   gCTATTCAAAGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagc                         <  1:979707‑M2/91‑68 (MQ=255)

                                                                   gCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTGAAATAGTCTTTATTTAAATTGGATTATGTTATTGGAttttatca                         >  1:3074349/1‑87 (MQ=255)

                                                                   gCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTa                         >  1:1809468/1‑91 (MQ=255)

                                                                    cTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTAc                        >  1:8544/1‑91 (MQ=255)

                                                                      aTTCAAAGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaag                      <  2:2754841‑M2/91‑71 (MQ=255)

                                                                       ttCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTa                     >  1:3045522/1‑91 (MQ=255)

                                                                       ttCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTa                     >  2:819195/1‑91 (MQ=255)

                                                                          aaaGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaa                  <  2:3782944/91‑1 (MQ=255)

                                                                           aaGTAAACTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaa                 <  2:3457764/91‑1 (MQ=255)

                                                                            aGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaagctatat                <  2:2764488‑M2/91‑77 (MQ=255)

                                                                             gTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGCTTATGTTATTGGATTTTCTTACCTACaaaaa               >  2:1248245/1‑91 (MQ=255)

                                                                             gTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaaa               <  2:3587313/91‑1 (MQ=255)

                                                                             gTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaaa               >  1:1779727/1‑91 (MQ=255)

                                                                             gTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaaa               <  1:2400884/91‑1 (MQ=255)

                                                                              tAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaagctatataa              <  2:3527617‑M2/91‑79 (MQ=255)

                                                                               aaaaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACg             >  2:912011/1‑91 (MQ=255)

                                                                               aaaaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACg             >  2:1956208/1‑91 (MQ=255)

                                                                                aaaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAATAACGa            >  2:3756975/1‑91 (MQ=255)

                                                                                aaaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGa            <  2:1607797/91‑1 (MQ=255)

                                                                                  aTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGAtt          <  1:2378743/91‑1 (MQ=255)

                                                                                  aTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGAtt          >  2:1629011/1‑91 (MQ=255)

                                                                                   ttACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGAAATTATTTAAATTTGATTATGTTATTGGATTTTCTTACCTACAAAAACGAttt         >  1:1498074/1‑91 (MQ=255)

                                                                                   ttACTCAAACTTTGAATAGCCTTTCCTCTACAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGAttt         >  2:3383452/1‑91 (MQ=255)

                                                                                    tACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaagctatataaagcata        <  2:2502689‑M2/91‑85 (MQ=255)

                                                                                    tACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTc        <  1:2388341/91‑1 (MQ=255)

                                                                                    tACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTc        <  1:1587651/91‑1 (MQ=255)

                                                                                      cTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCtt      <  2:863294/91‑1 (MQ=255)

                                                                                          aaCTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGAtg  <  2:1391443/91‑1 (MQ=255)

TTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGATG  >  USA300TCH1516_ALE/2057393‑2057573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.