| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2121137 = | 220 (1.150) | 15 (0.080) | 11/152 | NT | 7.2% | intergenic (‑63/+32) | USA300HOU_RS10790/USA300HOU_RS10795 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2121165 = | 180 (1.000) | intergenic (‑91/+4) | USA300HOU_RS10790/USA300HOU_RS10795 | hypothetical protein/hypothetical protein | |||||
TTGCAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2121230‑2121137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACA > USA300TCH1516_ALE/2121165‑2121254 TTGCAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAAC < 1:1456854/91‑1TTGCAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAAC < 2:658573/91‑1TTGCAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAAC > 1:2757870/1‑91 CAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT > 1:1160765/1‑91 CAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT > 2:2951612/1‑91 CAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT > 2:2951434/1‑91 CAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT < 2:1347500/91‑1 AGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATAT > 1:724839/1‑91 CTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGT > 2:117765/1‑91 ATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTCCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAA > 2:3057853/1‑91 GAATAAAAAAACTGCAACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGAATTCTTTGTAGTATATGAATGTTCCAATGCTT > 1:3305900/1‑91 AAAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGA > 1:474317/1‑91 AAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAA > 2:315656/1‑91 AAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAA > 1:218360/1‑91 AAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATC > 1:1414759/1‑91 AAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATC > 1:557331/1‑91 ACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTG > 1:2571643/1‑91 ACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTG > 1:2571131/1‑91 TGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCA > 2:854409/1‑91 TGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCA > 2:481354/1‑91 CTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAAT > 2:3407834/1‑91 AAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAG < 1:3407834/91‑1 TAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGA > 1:3730440/1‑91 TAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGA > 1:1784513/1‑91 CAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGT > 1:371160/1‑91 CAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGT > 1:2190552/1‑91 CAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGT < 1:722052/91‑1 AGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTA < 1:954145/91‑1 GTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTAC < 1:190350/91‑1 GTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTAC < 1:1819885/91‑1 TTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACA < 2:2805638/91‑1 TTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACA > 2:1561561/1‑91 TTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACA < 1:2735496/91‑1 TTGCAGGATTCGCAAGCATTGGAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2121230‑2121137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACA > USA300TCH1516_ALE/2121165‑2121254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |