BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2121137 =	220 (1.150)	15 (0.080)	11/152	NT	7.2%	intergenic (‑63/+32)	USA300HOU_RS10790/USA300HOU_RS10795	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	2121165 =	180 (1.000)	15 (0.080)	11/152	NT	7.2%	intergenic (‑91/+4)	USA300HOU_RS10790/USA300HOU_RS10795	hypothetical protein/hypothetical protein

Only 100 of 279 total aligned reads displayed.

GAGTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTG  >  USA300TCH1516_ALE/2121047‑2121227

tgtacttcactacagcgtggtcaattgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaa                                                                                            <  1:2735496‑M1/1‑1 (MQ=255)

gAGTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCa                                                                                            <  2:2328779/91‑1 (MQ=255)

 gtacttcactacagcgtggtcaattgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaAc                                                                                           <  1:190350‑M1/2‑1 (MQ=255)

 gtacttcactacagcgtggtcaattgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaAc                                                                                           <  1:1819885‑M1/2‑1 (MQ=255)

 aGTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCAc                                                                                           <  1:1218575/91‑1 (MQ=255)

  tacttcactacagcgtggtcaattgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACt                                                                                          <  1:954145‑M1/3‑1 (MQ=255)

  gTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACt                                                                                          >  1:904429/1‑91 (MQ=255)

  gTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACt                                                                                          >  1:2512074/1‑91 (MQ=255)

  gTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACt                                                                                          <  2:1649890/91‑1 (MQ=255)

  gTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACt                                                                                          >  2:2115519/1‑91 (MQ=255)

   acttcactacagcgtggtcaattgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTg                                                                                         >  1:371160‑M1/88‑91 (MQ=255)

     atatCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGtt                                                                                       <  2:748669/91‑1 (MQ=255)

     atatCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGtt                                                                                       <  2:31225/91‑1 (MQ=255)

       atCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTAc                                                                                     >  2:3269569/1‑91 (MQ=255)

        tCTTTATAATTTTTAGTCATGGTTGTCTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGCTACt                                                                                    <  2:1677427/91‑1 (MQ=255)

        tCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACt                                                                                    <  2:266056/91‑1 (MQ=255)

        tCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACt                                                                                    <  2:2072052/91‑1 (MQ=255)

         ctacagcgtggtcaattgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACtt                                                                                   <  1:3407834‑M1/10‑1 (MQ=255)

         cTTTATAATTTTTAGTTATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACtt                                                                                   >  2:1261845/1‑91 (MQ=255)

         cTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACtt                                                                                   >  2:42140/1‑91 (MQ=255)

          tttATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACttg                                                                                  <  1:1603865/91‑1 (MQ=255)

              taATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGa                                                                              <  2:2853942/91‑1 (MQ=255)

              taATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAAGTAATTTTGTTAATCGTTTGTCACTGTTACttgttgc                                                                              >  2:3835168/1‑90 (MQ=255)

                aTTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACg                                                                            >  1:2798406/1‑91 (MQ=255)

                aTTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACg                                                                            >  1:991123/1‑91 (MQ=255)

                aTTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACg                                                                            >  2:1438349/1‑91 (MQ=255)

                  ttttAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCa                                                                          >  1:2479580/1‑91 (MQ=255)

                  ttttAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCa                                                                          >  1:2050042/1‑91 (MQ=255)

                   tttAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCaa                                                                         >  1:2842244/1‑91 (MQ=255)

                    ttAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAg                                                                        >  2:339803/1‑91 (MQ=255)

                      aGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTa                                                                      <  1:1170313/91‑1 (MQ=255)

                      aGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTa                                                                      <  1:3832968/91‑1 (MQ=255)

                      aGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTa                                                                      <  1:3555013/91‑1 (MQ=255)

                       gTCATGGTTGACTTCCTCCTTGTGTCGTTTTATATTGAAAATGGATTAATGTTGATAATCGTTTGTCACTGTTACTTGTTGACTCAAGTAg                                                                     <  2:3611355/91‑1 (MQ=37)

                        tCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGc                                                                    <  2:3770574/91‑1 (MQ=255)

                        tCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGc                                                                    >  1:1125097/1‑91 (MQ=255)

                         tgcaggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCa                                                                   >  2:854409‑M1/66‑91 (MQ=255)

                           tGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGt                                                                 <  1:970458/91‑1 (MQ=255)

                           tGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGt                                                                 <  1:3766248/91‑1 (MQ=255)

                             gTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttt                                                               >  1:2435918/1‑91 (MQ=255)

                              ttGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                              <  2:3022171/91‑1 (MQ=255)

                              ttGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                              <  1:644398/91‑1 (MQ=255)

                              gattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                              >  1:557331‑M1/61‑91 (MQ=255)

                              gattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                              >  1:1414759‑M1/61‑91 (MQ=255)

                               tGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                             <  1:2569249/91‑1 (MQ=255)

                               tGAATTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                             <  1:3006670/91‑1 (MQ=255)

                                gACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttttt                                                            <  1:1066242/91‑1 (MQ=255)

                                gACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAAGTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttttt                                                            >  2:3199035/1‑91 (MQ=255)

                                 aCTTCCTCCTTGTTTCGTTTTATATTGAAATTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttttt                                                           <  2:3482304/91‑1 (MQ=255)

                                 aCTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttttt                                                           <  2:87354/91‑1 (MQ=255)

                                   ttCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAt                                                         <  1:3123771/91‑1 (MQ=255)

                                     cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                       <  1:1748466/91‑1 (MQ=255)

                                     cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                       <  2:531363/91‑1 (MQ=255)

                                     cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                       <  1:3452531/91‑1 (MQ=255)

                                     aagcattggaacattcatatactacaaagaattcttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTTGCAGTTTTTTTAttc                                                       >  1:3305900‑M1/54‑91 (MQ=255)

                                      ctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttct                                                      >  1:453965/1‑91 (MQ=255)

                                           tGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATa                                                 >  2:1585075/1‑91 (MQ=255)

                                            gTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                                <  2:2486653/91‑1 (MQ=255)

                                            gTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                                <  2:3765668/91‑1 (MQ=255)

                                            gTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                                <  2:3735843/91‑1 (MQ=255)

                                             tttCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaaa                                               <  2:1561704/91‑1 (MQ=255)

                                              ttCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaaaa                                              <  1:490645/91‑1 (MQ=255)

                                               tCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAg                                             >  1:1267498/1‑91 (MQ=255)

                                                cGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                            >  1:368051/1‑91 (MQ=255)

                                                cGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                            >  2:1929066/1‑91 (MQ=255)

                                                cGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                            >  2:1929492/1‑91 (MQ=255)

                                                 gTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                           <  2:1178302/91‑1 (MQ=255)

                                                 gTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                           <  2:2380977/91‑1 (MQ=255)

                                                     atatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCt                                       >  1:724839‑M1/38‑91 (MQ=255)

                                                      atatTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAATTATTCtt                                      >  2:3448213/1‑91 (MQ=255)

                                                       tatTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCttt                                     <  1:2257405/91‑1 (MQ=255)

                                                            aaaaTGAATTAATTTTGTTAATCGTTTGTCTCTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagt                                >  2:2258087/1‑91 (MQ=255)

                                                              aaTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtat                              <  1:2674566/91‑1 (MQ=255)

                                                               aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                             <  1:3372300/91‑1 (MQ=255)

                                                               aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                             <  1:1867525/91‑1 (MQ=255)

                                                               aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                             <  1:2080304/91‑1 (MQ=255)

                                                                 gAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATg                           <  1:1497424/91‑1 (MQ=255)

                                                                  aattaattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                          >  1:1552174/1‑91 (MQ=255)

                                                                  aattaattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                          >  1:1583327/1‑91 (MQ=255)

                                                                   attaattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGaa                         >  2:910509/1‑91 (MQ=255)

                                                                     taattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATg                       <  2:1346322/91‑1 (MQ=255)

                                                                      aattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGt                      >  2:2749700/1‑91 (MQ=255)

                                                                       attTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGtt                     >  2:3575022/1‑91 (MQ=255)

                                                                        ttttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTc                    <  2:2682555/91‑1 (MQ=255)

                                                                        ttttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTc                    <  1:219794/91‑1 (MQ=255)

                                                                        ttttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAAAGTTc                    <  1:3063863/91‑1 (MQ=255)

                                                                         tttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTcc                   <  2:2178689/91‑1 (MQ=255)

                                                                            gTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAAt                >  2:261796/1‑91 (MQ=255)

                                                                            gTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAAt                <  1:2847184/91‑1 (MQ=255)

                                                                             ttAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTCGTAGTATATGAATGTTCCAATg               >  2:3133666/1‑91 (MQ=255)

                                                                              tAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGc              <  2:2024959/91‑1 (MQ=255)

                                                                               aaTCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCt             <  1:2182144/91‑1 (MQ=255)

                                                                                aTCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCtt            >  2:2881115/1‑91 (MQ=255)

                                                                                 tCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTg           <  1:1654290/91‑1 (MQ=255)

                                                                                     ttGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGaa       <  2:691374/91‑1 (MQ=255)

                                                                                      tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAAt      <  2:3066814/91‑1 (MQ=255)

                                                                                       gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATc     >  2:1105375/1‑91 (MQ=255)

                                                                                        tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTTTTTATATAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATcc    >  2:1802457/1‑91 (MQ=255)

                                                                                          ACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTg  >  1:1160765‑M1/1‑91 (MQ=255)

                                                                                          ACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTg  >  2:2951612‑M1/1‑91 (MQ=255)

GAGTCATATCTTTATAATTTTTAGTCATGGTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTG  >  USA300TCH1516_ALE/2121047‑2121227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.