New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2121137 =220 (1.150)15 (0.080) 11/152 NT 7.2% intergenic (‑63/+32) USA300HOU_RS10790/USA300HOU_RS10795 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2121165 = 180 (1.000)intergenic (‑91/+4) USA300HOU_RS10790/USA300HOU_RS10795 hypothetical protein/hypothetical protein

Only 100 of 251 total aligned reads displayed.

GTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACAG  >  USA300TCH1516_ALE/2121076‑2121255
                                                                                         |                                                                                          
 ttGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                                                          <  2:3022171/91‑1 (MQ=255)
 ttGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                                                          <  1:644398/91‑1 (MQ=255)
 ttGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttt                                                                                          <  1:1685143/91‑1 (MQ=255)
  tGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                                                         <  1:1141091/91‑1 (MQ=255)
  tGAATTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                                                         <  1:3006670/91‑1 (MQ=255)
   ttcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGtttttt                                                                                        >  2:315656‑M1/59‑91 (MQ=255)
   gACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGtttttt                                                                                        <  1:1066242/91‑1 (MQ=255)
    aCTTCCTCCTTGTTTCGTTTTATATTGAAATTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttttt                                                                                       <  2:3482304/91‑1 (MQ=255)
    aCTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttttt                                                                                       <  2:87354/91‑1 (MQ=255)
    aCTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttttt                                                                                       >  1:2931174/1‑91 (MQ=255)
     cTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTa                                                                                      >  2:3173986/1‑91 (MQ=255)
       tcctccTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAtt                                                                                    >  1:1164656/1‑91 (MQ=255)
        cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttt                                                                                   >  2:2456586/1‑90 (MQ=255)
        cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                   <  1:3452531/91‑1 (MQ=255)
        cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                   <  2:531363/91‑1 (MQ=255)
        cctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                   <  1:2260371/91‑1 (MQ=255)
         ctcctTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttct                                                                                  >  1:453965/1‑91 (MQ=255)
              tGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATa                                                                             <  2:1287262/91‑1 (MQ=255)
              tGTTTCGTTTTATAGTGAAAATGAATTAATTTTGTTAATCGTTTGTCTCTTTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCAtt                                                                             <  2:266586/91‑2 (MQ=25)
               gTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                                                            <  2:3760763/91‑1 (MQ=255)
               gTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                                                            <  1:1562002/91‑1 (MQ=255)
                tttCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaaa                                                                           <  2:1561855/91‑1 (MQ=255)
                 ttCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaaaa                                                                          >  2:3086776/1‑91 (MQ=255)
                  tCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGATTGTCACTGTTACATGTTGACGCAAGTAGCAGTTTTTTTATTCTTCACAAAAg                                                                         >  1:3616188/1‑91 (MQ=255)
                  acattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAg                                                                         >  2:117765‑M1/44‑91 (MQ=255)
                   cGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                                                        >  1:368081/1‑91 (MQ=255)
                   cGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                                                        >  2:1929066/1‑91 (MQ=255)
                   cGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                                                        >  2:1929492/1‑91 (MQ=255)
                    gTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                                                       <  2:1178175/91‑1 (MQ=255)
                    gTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                                                       <  2:3270840/91‑1 (MQ=255)
                    gTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                                                       <  1:3076287/91‑1 (MQ=255)
                    gTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                                                       <  2:2380977/91‑1 (MQ=255)
                     ttttATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTAt                                                                      <  1:1224057/91‑1 (MQ=255)
                     ttttATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTAt                                                                      <  2:3768891/91‑1 (MQ=255)
                        tataTTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCt                                                                   >  1:2483390/1‑91 (MQ=255)
                          tatTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCttt                                                                 <  1:2257405/91‑1 (MQ=255)
                           atTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTg                                                                <  1:1824135/91‑1 (MQ=255)
                              gAAAATGAATTAATTTTGTTAATCGTTTGTCTCTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtag                                                             <  2:2880677/91‑1 (MQ=255)
                              gAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtag                                                             <  2:860623/91‑1 (MQ=255)
                              gAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtag                                                             <  2:831503/91‑1 (MQ=255)
                              gAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtag                                                             >  2:2746437/1‑91 (MQ=255)
                               aaaaTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTATCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagt                                                            <  1:3286554/91‑1 (MQ=255)
                                 aaTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtat                                                          <  1:2674566/91‑1 (MQ=255)
                                  aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                                                         <  1:3372300/91‑1 (MQ=255)
                                  aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                                                         <  1:2080290/91‑1 (MQ=255)
                                  aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                                                         <  2:3442933/91‑1 (MQ=255)
                                  aTGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                                                         <  1:129138/91‑1 (MQ=255)
                                   agaatacttttatgaagaataaaaaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTatat                                                        >  1:724839‑M2/55‑91 (MQ=255)
                                     aattaattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                                                      >  1:1552174/1‑91 (MQ=255)
                                      attaattTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGaa                                                     >  2:910509/1‑91 (MQ=255)
                                          attTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGtt                                                 >  2:3575022/1‑91 (MQ=255)
                                           ttttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTc                                                <  1:219794/91‑1 (MQ=255)
                                           ttttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTc                                                <  2:2682555/91‑1 (MQ=255)
                                           tttcGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAAAGTTc                                                <  1:3063801/91‑1 (MQ=255)
                                            tttGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTcc                                               <  2:2178689/91‑1 (MQ=255)
                                              atgaagaataaaaaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTCCATAAAAGTATTCTTTGTAGTATATGAATGTTCCaa                                             >  2:3057853‑M2/44‑91 (MQ=255)
                                               gTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAAt                                            <  1:2847184/91‑1 (MQ=255)
                                               gTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAAt                                            >  2:261796/1‑91 (MQ=255)
                                                 tAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGc                                          <  2:2025006/91‑1 (MQ=255)
                                                   gaataaaaaaactgcaacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGAATTCTTTGTAGTATATGAATGTTCCAATGCtt                                        >  1:3305900‑M2/39‑91 (MQ=255)
                                                    tCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTg                                       <  1:539188/91‑1 (MQ=255)
                                                    tCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTg                                       >  1:980608/1‑91 (MQ=255)
                                                       aaaaaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGa                                    >  1:474317‑M2/35‑91 (MQ=255)
                                                        ttGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGaa                                   <  2:691374/91‑1 (MQ=255)
                                                        ttGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGaa                                   <  2:425229/91‑1 (MQ=255)
                                                        aaaaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGaa                                   >  1:218360‑M2/34‑91 (MQ=255)
                                                          gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATc                                 <  1:2450545/91‑1 (MQ=255)
                                                          gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATc                                 <  1:3828413/91‑1 (MQ=255)
                                                          aaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATc                                 >  1:1414759‑M2/32‑91 (MQ=255)
                                                          aaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATc                                 >  1:557331‑M2/32‑91 (MQ=255)
                                                           tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTTTTTATATAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATcc                                >  2:1802457/1‑91 (MQ=255)
                                                           tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATcc                                <  1:1585075/91‑1 (MQ=255)
                                                             actgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTg                              >  1:2571131‑M2/29‑91 (MQ=255)
                                                             ACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTg                              <  2:1347500‑M1/91‑1 (MQ=255)
                                                             ACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTg                              >  2:2951612‑M1/1‑91 (MQ=255)
                                                                GTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCaa                           <  1:1456854‑M1/91‑1 (MQ=255)
                                                                GTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCaa                           >  1:2757870‑M1/1‑91 (MQ=255)
                                                                 ttACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAAt                          >  1:2810635/1‑91 (MQ=255)
                                                                    cTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGa                       <  2:1505787/91‑1 (MQ=255)
                                                                    cTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGa                       >  1:3806023/1‑91 (MQ=255)
                                                                    cTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGa                       <  2:3317736/91‑1 (MQ=255)
                                                                    cTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGa                       >  2:230911/1‑91 (MQ=255)
                                                                      tgttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGAcc                     <  2:1048897/91‑1 (MQ=255)
                                                                      tgttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGAcc                     >  2:2126332/1‑91 (MQ=255)
                                                                       gttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCa                    >  2:1623670/1‑91 (MQ=255)
                                                                        ttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCAc                   <  2:2161163/91‑1 (MQ=255)
                                                                         tgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACg                  <  2:3735676/91‑1 (MQ=255)
                                                                          gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGc                 <  1:2120429/91‑1 (MQ=255)
                                                                          gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGc                 <  1:1653465/91‑1 (MQ=255)
                                                                              cAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTa             <  2:2050042/91‑1 (MQ=255)
                                                                               aagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAg            <  1:3407834‑M2/81‑1 (MQ=255)
                                                                                aGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGt           <  1:3634496/91‑1 (MQ=255)
                                                                                 gTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTg          >  1:1269371/1‑91 (MQ=255)
                                                                                 gTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTg          >  2:1462507/1‑91 (MQ=255)
                                                                                  taacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGa         >  1:1784513‑M2/8‑91 (MQ=255)
                                                                                    gCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAg       <  1:684019/91‑1 (MQ=255)
                                                                                     cagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGt      >  1:371160‑M2/5‑91 (MQ=255)
                                                                                       gtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTAc    <  1:190350‑M2/89‑1 (MQ=255)
                                                                                        tTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACa   <  2:2805638‑M2/90‑1 (MQ=255)
                                                                                        tTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACa   >  2:1561561‑M2/2‑91 (MQ=255)
                                                                                         |                                                                                          
GTTGACTTCCTCCTTGTTTCGTTTTATATTGAAAATGAATTAATTTTGTTAATCGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCCTGCAATTGACCACGCTGTAGTGAAGTACAG  >  USA300TCH1516_ALE/2121076‑2121255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.