| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141814 = | 175 (0.920) | 15 (0.080) | 8/152 | NT | 8.3% | coding (274/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141841 = | 165 (0.910) | coding (247/1617 nt) | groL | 60 kDa chaperonin | |||||
TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2141907‑2141814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > USA300TCH1516_ALE/2141841‑2141930 TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTG > 1:1718093/1‑91TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTG < 2:1780569/91‑1TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTG < 2:2402339/91‑1TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTG > 1:578735/1‑91TTAGAAGAGTCATATGAAAATATGGCGGCTAAACTAGTTCAAGAAGTCGCAAATAAGTCAAATGAAATTGCTGGTGACGGTACGACAACTG < 2:3363966/91‑1 TAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGC > 1:2347313/1‑91 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATCAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA > 2:1098256/1‑91 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA < 1:3731286/91‑1 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA < 2:2994937/91‑1 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA > 2:2558512/1‑91 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA < 2:2178846/91‑1 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA > 2:213656/1‑91 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA > 2:213644/1‑91 GAAGATCCATAGGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA < 1:3520680/91‑1 CGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCC > 2:369615/1‑91 AAATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCCTATGGATC > 2:3314799/1‑91 AATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCT > 1:2925087/1‑91 AATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCT > 1:2925040/1‑91 ATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTT > 1:1066238/1‑91 ATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTT > 1:2887271/1‑91 TTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > 1:541987/1‑91 GCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTA > 2:144790/1‑91 GCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTA > 2:619012/1‑91 GCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTA > 2:692789/1‑91 GCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTA > 1:517964/1‑91 CTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAA > 2:101155/1‑91 CTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAA > 2:3489445/1‑91 CTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAA > 2:3561199/1‑91 GGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATT > 1:1500414/1‑91 GCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCt > 1:3137608/1‑90 GCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCG < 1:3751705/91‑1 AATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTC < 1:3458596/91‑1 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 2:2266668/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 2:2380116/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 1:906527/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 2:2931785/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 2:2932242/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 1:3766052/1‑91 TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2141907‑2141814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > USA300TCH1516_ALE/2141841‑2141930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |