BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2141814 =	175 (0.920)	15 (0.080)	8/152	NT	8.3%	coding (274/1617 nt)	groL	60 kDa chaperonin
*	?	USA300TCH1516_ALE	2141841 =	165 (0.910)	15 (0.080)	8/152	NT	8.3%	coding (247/1617 nt)	groL	60 kDa chaperonin

Only 100 of 239 total aligned reads displayed.

CTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA  >  USA300TCH1516_ALE/2141751‑2141930

cTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAt                                                                                           >  2:2213721/1‑91 (MQ=255)

 tGGGTTCGCGCCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAtt                                                                                          <  1:3719569/91‑1 (MQ=255)

  gggTTCGCACCACTTGTAACATTTTTCAGGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAttt                                                                                         <  2:2460572/91‑1 (MQ=255)

  gggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGACGTACCGTCACCAGCAAttt                                                                                         >  1:2733287/1‑91 (MQ=255)

  gggTTCGCACCACTTATAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAttt                                                                                         >  1:3313926/1‑91 (MQ=255)

   ggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTc                                                                                        >  2:492869/1‑91 (MQ=255)

   ggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCCAATACTGTTGCAGTTGTCCTACCGTCCCCAGCAATTTc                                                                                        >  1:580003/1‑91 (MQ=255)

    gTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCa                                                                                       <  1:818795/91‑1 (MQ=255)

     ttCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAt                                                                                      <  2:699008/91‑1 (MQ=255)

      tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt                                                                                     >  1:1654151/1‑91 (MQ=255)

       cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt                                                                                    <  2:3454166/91‑1 (MQ=255)

        gCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTg                                                                                   <  1:2071373/91‑1 (MQ=255)

         caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt                                                                                  <  2:2342204/91‑1 (MQ=255)

            cacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCtt                                                                               >  2:2347313/1‑91 (MQ=255)

             acTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTa                                                                              >  1:1468433/1‑91 (MQ=255)

               ttGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAtt                                                                            >  1:1158161/1‑91 (MQ=255)

                tGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAttt                                                                           <  2:2282106/91‑1 (MQ=255)

                 gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg                                                                          <  2:2434257/91‑1 (MQ=255)

                 gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg                                                                          <  2:783415/91‑1 (MQ=255)

                 gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg                                                                          <  1:1801846/91‑1 (MQ=255)

                  tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc                                                                         <  2:1385721/91‑1 (MQ=255)

                  tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc                                                                         <  1:3546759/91‑1 (MQ=255)

                   aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg                                                                        >  2:606446/1‑91 (MQ=255)

                       tttttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActt                                                                    <  2:3695044/91‑1 (MQ=255)

                        ttttCAAGCCTTCTTCAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtc                                                                   >  1:3303192/1‑91 (MQ=255)

                          ttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtctt                                                                 <  2:1131996/91‑1 (MQ=255)

                           tCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTg                                                                >  1:2183158/1‑91 (MQ=255)

                            cAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAACAATTTCATTTGTCTTATTTGCGACTTCTTGa                                                               <  1:2408222/91‑1 (MQ=255)

                              aGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAAc                                                             <  1:1443673/91‑1 (MQ=255)

                               gCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATCTGTCTTATTTGCGACTTCTTGAACt                                                            >  1:3603194/1‑91 (MQ=255)

                                 cttcttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAg                                                          <  2:1840590/91‑1 (MQ=255)

                                   tcttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGtt                                                        <  2:3798826/91‑1 (MQ=255)

                                      tGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAg                                                     >  2:278332/1‑91 (MQ=255)

                                       gAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGc                                                    >  1:1307122/1‑91 (MQ=255)

                                        aaTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcc                                                   >  1:2930641/1‑91 (MQ=255)

                                        aaTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcc                                                   <  1:2543172/91‑1 (MQ=255)

                                          tCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcccc                                                 <  1:2012526/91‑1 (MQ=255)

                                          tCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcccc                                                 <  1:428151/91‑1 (MQ=255)

                                           cgcaaataagacaaatgaaattgctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGccccc                                                >  2:369615‑M2/48‑91 (MQ=255)

                                            aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa                                               <  1:3468877/91‑1 (MQ=255)

                                            aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa                                               <  1:3469341/91‑1 (MQ=255)

                                            aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa                                               <  2:1527347/91‑1 (MQ=255)

                                               gCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatat                                            <  1:1859091/91‑1 (MQ=255)

                                               gCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatat                                            >  1:708859/1‑91 (MQ=255)

                                                cTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtt                                           >  1:396778/1‑91 (MQ=255)

                                                 ttGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAttt                                          >  2:3047239/1‑91 (MQ=255)

                                                  tGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtttt                                         <  1:611301/91‑1 (MQ=255)

                                                  tGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtttt                                         <  1:87228/91‑1 (MQ=255)

                                                   gAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatatgaaa                                        <  1:3685644/91‑5 (MQ=255)

                                                   gAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatatgaaa                                        <  2:397647/91‑5 (MQ=255)

                                                    aGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCa                                       <  1:1145408/91‑1 (MQ=255)

                                                     gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCat                                      <  2:3156353/91‑1 (MQ=255)

                                                      cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata                                     >  1:3034975/1‑91 (MQ=255)

                                                       tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat                                    <  2:1956999/91‑1 (MQ=255)

                                                       tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat                                    >  2:680134/1‑91 (MQ=255)

                                                       tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat                                    >  1:1994838/1‑91 (MQ=255)

                                                        aaTACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATg                                   >  2:113414/1‑91 (MQ=255)

                                                        aaTACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATg                                   <  2:109199/91‑1 (MQ=255)

                                                           aCTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAt                                <  1:3566101/91‑1 (MQ=255)

                                                            cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc                               >  1:2587434/1‑91 (MQ=255)

                                                            cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc                               <  1:1696767/91‑1 (MQ=255)

                                                             aattgctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtct                              >  1:2925040‑M2/30‑91 (MQ=255)

                                                              gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt                             >  1:2934766/1‑91 (MQ=255)

                                                              gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTCCATATGGAtctt                             >  2:3222130/1‑91 (MQ=255)

                                                              attgctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt                             >  1:1066238‑M2/29‑91 (MQ=255)

                                                              attgctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt                             >  1:2887271‑M2/29‑91 (MQ=255)

                                                               ttgctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc                            >  1:541987‑M2/28‑91 (MQ=255)

                                                               TTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc                            >  2:213656‑M1/1‑91 (MQ=255)

                                                                TGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttct                           <  2:2994937‑M1/91‑1 (MQ=255)

                                                                 GCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTa                          >  1:2347313‑M1/1‑91 (MQ=255)

                                                                  CAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTaa                         <  2:1780569‑M1/91‑1 (MQ=255)

                                                                  CAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTaa                         >  1:1718093‑M1/1‑91 (MQ=255)

                                                                  CAGTTGTCGTACCGTCACCAGCAATTTCATTTGACTTATTTGCGACTTCTTGAACTAGTTTAGCCGCCATATTTTCATATGACTCTTCTaa                         <  2:3363966‑M1/91‑1 (MQ=255)

                                                                    gTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAtt                       <  1:2343070/91‑1 (MQ=255)

                                                                     ttGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTc                      >  2:1658305/1‑91 (MQ=255)

                                                                     ttGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTc                      <  2:2893786/91‑1 (MQ=255)

                                                                       gTCGTACCGTCACCAGCAATTTCATTTGTCTTATTGGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATCTGGATCTTCTAATTCGa                    >  2:1699536/1‑91 (MQ=255)

                                                                       gTCGTACCGTCACCAGCAATTTCATATGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGa                    <  2:2023342/91‑1 (MQ=255)

                                                                         cGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAtt                  <  2:2676541/91‑1 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAtt                       >  2:26662/1‑85 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAtt                       <  1:26662/85‑1 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAttt                 >  1:1018483/1‑91 (MQ=255)

                                                                            aCCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCt               >  1:1408814/1‑91 (MQ=255)

                                                                             ccGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCtt              >  2:115668/1‑91 (MQ=255)

                                                                             ccGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCtt              >  1:2860656/1‑91 (MQ=255)

                                                                             ccGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCtt              >  2:1935329/1‑91 (MQ=255)

                                                                              cGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCttt             <  1:278332/91‑1 (MQ=255)

                                                                              cGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCttt             <  1:2279068/91‑1 (MQ=255)

                                                                               gTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTa            <  2:3313926/91‑1 (MQ=255)

                                                                                tCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAg           <  2:838582/91‑1 (MQ=255)

                                                                                tCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAg           <  2:2934751/91‑1 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa        >  1:3117444/1‑91 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa        >  1:55316/1‑91 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa        >  1:55687/1‑91 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa        <  2:1764647/91‑1 (MQ=255)

                                                                                    cAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAAt       >  1:3175059/1‑91 (MQ=255)

                                                                                      gcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCg     <  1:3751705‑M2/87‑1 (MQ=255)

                                                                                         aTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCa  >  2:2931785‑M2/2‑91 (MQ=255)

                                                                                         aTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCa  >  2:2380116‑M2/2‑91 (MQ=255)

                                                                                         aTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCa  >  2:2266668‑M2/2‑91 (MQ=255)

CTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA  >  USA300TCH1516_ALE/2141751‑2141930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.