| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141814 = | 175 (0.920) | 15 (0.080) | 8/152 | NT | 8.3% | coding (274/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141841 = | 165 (0.910) | coding (247/1617 nt) | groL | 60 kDa chaperonin | |||||
Only 100 of 220 total aligned reads displayed.
CTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > USA300TCH1516_ALE/2141724‑2141904 | tgacgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaat > 2:2266668‑M1/91‑91 (MQ=255)tgacgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaat > 2:2931785‑M1/91‑91 (MQ=255) tttGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGtt > 2:2704683/1‑91 (MQ=255) gacgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaatt < 1:3458596‑M1/2‑1 (MQ=255) cgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGc < 1:3751705‑M1/4‑1 (MQ=255) agattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGc > 1:3137608‑M1/88‑91 (MQ=255) gTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCa < 1:2461780/91‑1 (MQ=255) tCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAg > 1:1130195/1‑91 (MQ=255) cGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGt > 1:25906/1‑91 (MQ=255) tACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGt > 1:2965972/1‑91 (MQ=255) tACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGt < 2:2659220/91‑1 (MQ=255) tACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGt < 1:2911772/91‑1 (MQ=255) tACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGt > 1:2023342/1‑91 (MQ=255) aCCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTc < 1:496400/91‑1 (MQ=255) ccTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCg < 1:631270/91‑1 (MQ=255) ccTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCg < 1:307968/91‑1 (MQ=255) ccTTGTCATAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTACAGTTGTCg < 1:1947253/91‑1 (MQ=255) cTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGt > 1:3839247/1‑91 (MQ=255) cTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGt < 1:2852959/91‑1 (MQ=255) ttGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTa > 1:397647/1‑91 (MQ=255) ttGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTa < 2:1854685/91‑1 (MQ=255) tCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCg < 1:1202005/91‑1 (MQ=255) cGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGt > 2:2394635/1‑91 (MQ=255) tAAACCAACTGGGTTCTCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCa < 2:2984734/91‑1 (MQ=255) tAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCa < 1:1331615/91‑1 (MQ=255) tAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCa < 1:340332/91‑1 (MQ=255) aaaCCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCAc < 1:1694205/91‑1 (MQ=255) aaCCAACTGGGTTCGCACCACTTGTAACATTTTTCTTTTTTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCAcc > 2:2075673/1‑91 (MQ=255) aCCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCa > 1:2893786/1‑91 (MQ=255) ttagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAg > 2:3489445‑M1/68‑91 (MQ=255) ttagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAg > 2:101155‑M1/68‑91 (MQ=255) ccAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAg < 2:386863/91‑1 (MQ=255) ccAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAg < 2:3290789/91‑1 (MQ=255) cAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGc < 2:1128093/91‑1 (MQ=255) aaCTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCa < 2:2138525/91‑1 (MQ=255) aaCTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCa > 1:2796049/1‑91 (MQ=255) aagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGCAAt > 1:1066238‑M1/64‑91 (MQ=255) tGGGTTCGCACCACTTGTAACATTTTTTTTTTTTTCTTGTATCATTGCTTGAGCTTATACTGTTTCAGTTTTCGTACCGTCACCTGCAAtt > 2:1144166/1‑91 (MQ=255) tGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAtt > 1:1149515/1‑91 (MQ=255) tGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAtt < 1:2236771/91‑1 (MQ=255) gggTTCGCACCACTTGTAACATTTTTCAGGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAttt < 2:2460572/91‑1 (MQ=255) gatccataggaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGCAAttt > 2:3314799‑M1/62‑91 (MQ=255) ggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCCAATACTGTTGCAGTTGTCCTACCGTCCCCAGCAATTTc > 1:580003/1‑91 (MQ=255) ttCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAt < 2:699008/91‑1 (MQ=255) cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt < 2:511107/91‑1 (MQ=255) gCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTg < 1:2071373/91‑1 (MQ=255) caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt < 1:2544446/91‑1 (MQ=255) cacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCtt > 2:2347313/1‑91 (MQ=255) acTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTa > 1:1468433/1‑91 (MQ=255) ttGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAtt > 1:1158161/1‑91 (MQ=255) ttGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAtt < 1:1900111/91‑1 (MQ=255) tGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAttt < 2:2282106/91‑1 (MQ=255) gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg < 2:2434257/91‑1 (MQ=255) gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg < 2:783415/91‑1 (MQ=255) gTAACATTTTTCAAGCCTTCTTGAATCATGGCTTGAGCTAATACGGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg < 2:2224354/91‑1 (MQ=255) tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc < 1:1704647/91‑1 (MQ=255) tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc < 2:1385721/91‑1 (MQ=255) gggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg > 2:369615‑M1/45‑91 (MQ=255) aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg < 1:2139136/91‑1 (MQ=255) aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg > 2:606446/1‑91 (MQ=255) aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa < 2:1469539/91‑1 (MQ=255) aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa < 2:1712236/91‑1 (MQ=255) cATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGt < 2:2291078/55‑1 (MQ=255) tttttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActt > 1:3696530/1‑91 (MQ=255) ttttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtc > 2:431115/1‑91 (MQ=255) tttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtct > 1:2677101/1‑91 (MQ=255) tCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTg > 1:3565465/1‑91 (MQ=255) aaGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGaa > 1:546579/1‑91 (MQ=255) aaGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGaa > 2:2897460/1‑91 (MQ=255) aGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAAc > 1:2530645/1‑91 (MQ=255) gCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACt > 1:181141/1‑91 (MQ=255) tcttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGtt < 2:3798826/91‑1 (MQ=255) ttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTa > 2:1133406/1‑91 (MQ=255) tGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAg > 2:278332/1‑91 (MQ=255) aaTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcc > 1:2930641/1‑91 (MQ=255) aTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGccc < 1:1539216/91‑1 (MQ=255) aTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGccc < 1:1412054/91‑1 (MQ=255) tCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcccc < 2:1937505/91‑1 (MQ=255) aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 1:3469341/91‑1 (MQ=255) aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 1:3254942/91‑1 (MQ=255) cTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtt > 1:601077/1‑91 (MQ=255) tGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtttt < 1:87228/91‑1 (MQ=255) gAGCTAATACTGTTGCAGTTGTCGTACCGTCATCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTGAGCCCCCATATTTTc < 1:3310606/91‑1 (MQ=255) gAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTc > 2:1815452/1‑91 (MQ=255) gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCat < 1:2838840/91‑1 (MQ=255) gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCat < 2:3156353/91‑1 (MQ=255) cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata < 2:3021172/91‑1 (MQ=255) cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata > 1:71043/1‑91 (MQ=255) cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata > 1:3034975/1‑91 (MQ=255) cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata < 2:396778/91‑1 (MQ=255) tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat > 1:1995903/1‑91 (MQ=255) tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat > 2:680134/1‑91 (MQ=255) tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat < 2:1958098/91‑1 (MQ=255) tACTGTTGCAGTTGTCGTACCGTCAGCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGa < 1:3607029/91‑1 (MQ=255) aCTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAt < 1:3566122/91‑1 (MQ=255) gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt > 1:2934766/1‑91 (MQ=255) gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt > 1:1784020/1‑91 (MQ=255) gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTCCATATGGAtctt > 2:3222130/1‑91 (MQ=255) TTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCCTATGGAtcttc < 1:3520680‑M1/91‑1 (MQ=255) TTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc > 2:213644‑M1/1‑91 (MQ=255) | CTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > USA300TCH1516_ALE/2141724‑2141904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |