| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2143370 = | 217 (1.140) | 12 (0.080) | 11/132 | NT | 7.2% | intergenic (+5/+20) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2143414 = | 131 (0.840) | coding (1230/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2143473‑2143370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > USA300TCH1516_ALE/2143414‑2143503 ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGT < 1:3238311/91‑1 TGATGGTGGTATTTTCCATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTG > 2:689090/1‑91 GATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGT < 1:1126504/91‑1 GATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGT < 1:2269268/91‑1 ATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTG < 2:3495460/91‑1 ATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTG < 2:3495405/91‑1 ATGGTGGTATTTTCAATCATGCTATTCTGATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTG < 2:3496040/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 1:924512/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 1:924642/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 2:2619954/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT > 1:3603076/1‑91 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 2:2620091/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 1:936499/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 2:3104739/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 2:1507052/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT > 2:35790/1‑91 TGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAACAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTC < 1:2735081/91‑1 TGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTC < 1:947598/91‑1 TGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTC > 1:1990823/1‑91 gaTATTTTCAATCATGCTAATCTTATATGTAAAGCGAAATAAAAAGAAAAATAAAAACGATTCACAGCGACGATAATCCGTGTGTGATTCG < 2:235459/89‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG > 2:2344523/1‑91 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2844861/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2464057/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2464036/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:3098580/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:3098592/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 2:830321/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2463546/91‑1 GTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGT < 2:1242999/91‑1 TATTTTCAATCATGCTATTCTTAATTGTAAAGCAAAATAAAAAGAATAATAAAAACGAAGCACAGCGACGATAATCCGTGTGTGATTCGTT > 1:3100376/1‑91 TTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTT < 2:239977/91‑1 TTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTT > 1:356685/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT < 2:205970/91‑1 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT < 2:3640036/91‑1 TTTCAATCATGCAATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT > 1:2997267/1‑91 TATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTT > 1:707995/1‑91 AAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAG > 1:2749779/1‑91 ATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGA > 1:2963641/1‑91 AAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAA > 2:3514782/1‑91 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACC > 1:191376/1‑91 CACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGACAATACCACCAT > 2:1054236/1‑91 ACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATC > 1:1219864/1‑91 CAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCA > 2:3596162/1‑91 AGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > 2:1967361/1‑91 AGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAAAACCATCAT > 1:3501038/1‑91 ACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATTATTGAAAATACCTCCATCATAGta > 2:3655616/1‑89 ATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAT > 1:2885633/1‑91 TGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTA < 2:1153527/91‑1 GTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAG < 2:1263375/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:1550272/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:1551066/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:1551161/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 2:1695686/91‑1 TGATTCGTTTTTATTTTTCTTTTTATATCGCTTTACAAATATGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:1491144/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATGCAATTGCTAGCC < 1:2971194/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC > 1:2788039/1‑91 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 1:369955/91‑1 GATTCGTTTTTACTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 2:2000049/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 2:3180714/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 2:741602/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA > 2:3705572/1‑91 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA > 2:3705893/1‑91 TTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAA > 2:2472463/1‑91 TCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCGAC < 2:2104373/91‑1 TCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAAC < 2:2983052/91‑1 GTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTT < 2:1527999/91‑1 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT < 2:716472/91‑1 TTTTTATTTTTCTTTTTATTTCGCTCTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT < 2:842635/91‑1 TTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTT < 1:488453/91‑1 TTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTA > 2:2929785/1‑91 TATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > 1:1643884/1‑91 TATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > 1:1644001/1‑91 ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2143473‑2143370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > USA300TCH1516_ALE/2143414‑2143503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |