New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2143370 =217 (1.140)12 (0.080) 11/132 NT 7.2% intergenic (+5/+20) USA300HOU_RS10935/USA300HOU_RS10940 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2143414 = 131 (0.840)coding (1230/1254 nt) USA300HOU_RS10940 hypothetical protein

Only 100 of 238 total aligned reads displayed.

ACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACTA  >  USA300TCH1516_ALE/2143324‑2143504
                                                                                           |                                                                                          
aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa                                                                                            >  2:1268549/1‑91 (MQ=255)
aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa                                                                                            >  1:1527999/1‑91 (MQ=255)
 cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                                           <  1:1365255/91‑1 (MQ=255)
 cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                                           >  2:3350236/1‑91 (MQ=255)
 cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                                           <  2:2459966/91‑1 (MQ=255)
  tcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                                           >  1:2963641‑M1/46‑91 (MQ=255)
  ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                                                                          <  1:1461439/91‑1 (MQ=255)
      cAAGCGAATTTTAGATATCACATTTTTATTCCATAAT‑AAAAAAGACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc                                                                                      <  1:3882743/91‑1 (MQ=255)
        aGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt                                                                                    <  2:2938549/91‑1 (MQ=255)
         gCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt                                                                                   <  1:1767037/91‑1 (MQ=255)
           gAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttttt                                                                                 <  2:597743/91‑1 (MQ=255)
           gAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttttt                                                                                 <  1:2662465/91‑1 (MQ=255)
           gAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAAGCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttttt                                                                                 <  2:3477645/91‑1 (MQ=255)
            tattcttatttgtaaagcgaaataaaaagaaaaataaaaacgaatcacagcgacgataatccgtgtgtgattcgtttttATTTTTCttttt                                                                                 >  1:707995‑M2/80‑91 (MQ=255)
             atattATATATCACATTTTTATTACATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                                               <  2:1621064/88‑1 (MQ=255)
             aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGCATCACACACGGATTATCGTCGCTGTCATTCGTTTTTATTTTTCTTTTTAt                                                                               >  2:3603076/1‑91 (MQ=255)
             aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                                               <  1:69922/91‑1 (MQ=255)
             aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                                               <  1:1153357/91‑1 (MQ=255)
             aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                                               >  1:2645082/1‑91 (MQ=255)
              ttttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt                                                                              <  1:2809233/91‑1 (MQ=255)
              ttgtatataACACATTTTTATTCCATAAT‑AAAAAAAGCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt                                                                              <  2:282772/88‑1 (MQ=255)
                ttATATATCACATTTTTATTCCATAATAAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAttt                                                                             >  1:1054111/1‑91 (MQ=255)
                ttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtttt                                                                            >  2:2840378/1‑90 (MQ=255)
                ttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc                                                                            >  1:1584113/1‑91 (MQ=255)
                 tatataTCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCg                                                                           >  2:477113/1‑91 (MQ=255)
                  atatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                                                                          >  2:2390716/1‑91 (MQ=255)
                  atatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTAATTCGTTTTTATTTTTCTTTTTATTTCGc                                                                          >  1:3116544/1‑91 (MQ=255)
                   tatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt                                                                         >  1:3652184/1‑91 (MQ=255)
                    atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                                        >  1:309444/1‑91 (MQ=255)
                    atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                                        >  1:309958/1‑91 (MQ=255)
                     tatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCttt                                                                       <  2:3631628/91‑1 (MQ=255)
                         acaTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa                                                                   <  2:709022/91‑1 (MQ=255)
                         acaTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa                                                                   <  2:2006544/91‑1 (MQ=255)
                         acaTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa                                                                   >  1:901397/1‑91 (MQ=255)
                            tttttATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATa                                                                <  1:2009422/91‑1 (MQ=255)
                               ttATTTCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACATATAAGa                                                             >  2:378605/1‑91 (MQ=255)
                               ttATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa                                                             >  1:2370018/1‑91 (MQ=255)
                                tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                                                            >  2:3219940/1‑91 (MQ=255)
                                tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                                                            >  1:1041055/1‑91 (MQ=255)
                                tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                                                            <  2:2089943/91‑1 (MQ=255)
                                 aTTCCATAAT‑AAAAAAAACGAATCACACGCGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCTCTTTACAAATAAGAAt                                                           <  2:671855/91‑1 (MQ=255)
                                  ttCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa                                                          <  1:2487643/91‑1 (MQ=255)
                                  ttCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa                                                          >  1:666111/1‑91 (MQ=255)
                                  ttCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa                                                          >  2:2043042/1‑91 (MQ=255)
                                   tCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg                                                         >  1:2905760/1‑91 (MQ=255)
                                    ccATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                                        <  2:875632/91‑1 (MQ=255)
                                     cATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCa                                                       <  2:1345994/91‑1 (MQ=255)
                                     cATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCa                                                       <  2:2187389/91‑1 (MQ=255)
                                      ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt                                                      >  1:57600/1‑91 (MQ=255)
                                       taat‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTAAAAATAAGAATAGCATg                                                     <  2:2613623/91‑1 (MQ=255)
                                        aat‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGa                                                    <  1:2862452/91‑1 (MQ=255)
                                         at‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt                                                   <  2:3349438/91‑1 (MQ=255)
                                             aaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGa                                                <  2:1943403/91‑1 (MQ=255)
                                               AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATTGCATGATTGaaa                                              >  1:2997267‑M1/1‑91 (MQ=255)
                                                aaaacgaatcacagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaaa                                             >  2:3514782‑M2/44‑91 (MQ=255)
                                                AAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaaa                                             <  2:239977‑M1/91‑1 (MQ=255)
                                                   ACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATac                                          <  2:1242999‑M1/91‑1 (MQ=255)
                                                    cgaatcacagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                                         >  1:191376‑M2/40‑91 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                                         >  2:2344523‑M1/1‑91 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                                         <  1:2464036‑M1/91‑1 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGAATCGTTTTTATTTTTCTTTTTATTTCGCTTTACATATAAGATTAGCATGATTGAAAatatc                                         <  2:235459‑M1/91‑3 (MQ=255)
                                                     GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca                                        <  1:947598‑M1/91‑1 (MQ=255)
                                                     GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTGTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca                                        <  1:2735081‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      <  1:924642‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      <  2:2620091‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      <  2:3104739‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      <  2:1507052‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      >  2:35790‑M1/1‑91 (MQ=255)
                                                         cacagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGACAATACCACcat                                    >  2:1054236‑M2/35‑91 (MQ=255)
                                                         CACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcat                                    <  2:3495460‑M1/91‑1 (MQ=255)
                                                          acagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc                                   >  1:1219864‑M2/34‑91 (MQ=255)
                                                          ACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc                                   <  1:2269268‑M1/91‑1 (MQ=255)
                                                            agcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatcat                                 >  2:1967361‑M2/32‑91 (MQ=255)
                                                            agcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAAAACcatcat                                 >  1:3501038‑M2/32‑91 (MQ=255)
                                                            ACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatcat                                 <  1:3238311‑M1/91‑1 (MQ=255)
                                                              acGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAg                               <  1:1101580/91‑1 (MQ=255)
                                                               cGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGa                              >  2:1463155/1‑91 (MQ=255)
                                                                ggATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGaa                             >  1:3449595/1‑91 (MQ=255)
                                                                acgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATTATTGAAAATACCTCCATCAtagta                             >  2:3655616‑M2/28‑89 (MQ=255)
                                                                   ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt                          <  2:2272112/91‑1 (MQ=255)
                                                                     aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc                        <  2:2896869/91‑1 (MQ=255)
                                                                       cgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATGCaa                      >  1:3555606/1‑91 (MQ=255)
                                                                       cgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACaa                      >  1:1935436/1‑91 (MQ=255)
                                                                         tcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAAtt                    <  2:2312225/91‑1 (MQ=255)
                                                                          cgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTg                   <  2:1345113/91‑1 (MQ=255)
                                                                           gCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGc                  <  1:937832/91‑1 (MQ=255)
                                                                           gCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGc                  >  1:586774/1‑91 (MQ=255)
                                                                             tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTa                <  2:1153527‑M2/77‑1 (MQ=255)
                                                                               tgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGc              <  1:1551161‑M2/79‑1 (MQ=255)
                                                                                gattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGcc             >  1:2788039‑M2/12‑91 (MQ=255)
                                                                                 attcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCa            >  2:3705893‑M2/11‑91 (MQ=255)
                                                                                 attcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCa            <  2:741602‑M2/81‑1 (MQ=255)
                                                                                 attcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCa            <  2:3180714‑M2/81‑1 (MQ=255)
                                                                                   tcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAAc          <  2:2983052‑M2/83‑1 (MQ=255)
                                                                                     gtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACtt        <  2:1527999‑M2/85‑1 (MQ=255)
                                                                                      tttttATTTTTCTTTTTATTTCGCTCTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACttt       <  2:842635‑M2/86‑1 (MQ=255)
                                                                                       ttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACtttt      <  1:488453‑M2/87‑1 (MQ=255)
                                                                                          tATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACt   >  1:1643884‑M2/2‑91 (MQ=255)
                                                                                           aTTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACta  <  2:1903836/91‑1 (MQ=255)
                                                                                           aTTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACta  >  2:1699687/1‑91 (MQ=255)
                                                                                           |                                                                                          
ACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACTA  >  USA300TCH1516_ALE/2143324‑2143504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.