BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2143370 =	217 (1.140)	12 (0.080)	11/132	NT	7.2%	intergenic (+5/+20)	USA300HOU_RS10935/USA300HOU_RS10940	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	2143414 =	131 (0.840)	12 (0.080)	11/132	NT	7.2%	coding (1230/1254 nt)	USA300HOU_RS10940	hypothetical protein

Only 100 of 275 total aligned reads displayed.

TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAA  >  USA300TCH1516_ALE/2143280‑2143460

tCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑aaaa                                                                                            <  2:908602/91‑1 (MQ=255)

tCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑aaaa                                                                                            <  1:1422897/91‑1 (MQ=255)

tCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTACAAAAT‑aaaa                                                                                            <  2:2511247/91‑1 (MQ=255)

 agtaaaagttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaata                                                                                            >  1:1644001‑M1/91‑91 (MQ=255)

  gTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑aaaaaa                                                                                          <  1:924865/91‑1 (MQ=255)

    tataTTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑aaaaaaaa                                                                                        >  2:2648030/1‑91 (MQ=255)

    tataTTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑aaaaaaaa                                                                                        >  1:149474/1‑91 (MQ=255)

      aagttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAAc                                                                                       <  2:1527999‑M1/6‑1 (MQ=255)

        ttCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGaa                                                                                    <  2:2908896/91‑1 (MQ=255)

        ttCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGaa                                                                                    >  1:2406170/1‑91 (MQ=255)

        gttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGa                                                                                     <  2:2983052‑M1/8‑1 (MQ=255)

         tCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCAAAAAT‑AAAAAAAACGAAt                                                                                   <  2:531022/91‑1 (MQ=255)

          tggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAAt                                                                                   >  2:3705572‑M1/82‑91 (MQ=255)

          ccAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATc                                                                                  <  1:765871/91‑1 (MQ=255)

           ggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaagtAAAAACGAATc                                                                                  <  2:2000049‑M1/11‑1 (MQ=255)

           ggctagcaattgcatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATc                                                                                  <  1:2971194‑M1/11‑1 (MQ=255)

           cAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATca                                                                                 >  2:577277/1‑91 (MQ=255)

            gctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATca                                                                                 <  1:1550272‑M1/12‑1 (MQ=255)

            gctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATca                                                                                 <  2:1695686‑M1/12‑1 (MQ=255)

            aaTTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAAACGAATca                                                                                 <  1:883247/91‑1 (MQ=255)

            aaTTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATtac                                                                                >  2:1101580/1‑91 (MQ=255)

            aaTTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATcac                                                                                >  1:2900144/1‑91 (MQ=255)

               tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATcacaca                                                                             <  1:716041/91‑1 (MQ=255)

               tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTACATAAT‑AAAAAAAACGAATcacaca                                                                             <  2:1174289/91‑1 (MQ=255)

                aCTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCacacac                                                                            >  2:3299878/1‑91 (MQ=255)

                 cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACg                                                                           >  1:718280/1‑91 (MQ=255)

                 cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACg                                                                           <  2:2470472/91‑1 (MQ=255)

                   tAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGa                                                                         <  1:1347571/91‑1 (MQ=255)

                   tAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGa                                                                         <  1:3236478/91‑1 (MQ=255)

                     agccTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATAACAAAAA‑AAAAAAAACGAATCACACACGGAtt                                                                       <  2:217116/89‑1 (MQ=255)

                     aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGAtt                                                                       >  1:228836/1‑91 (MQ=255)

                       ccTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTAt                                                                     <  2:722189/91‑1 (MQ=255)

                       ccTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTAt                                                                     >  2:1421695/1‑91 (MQ=255)

                       ccTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTAt                                                                     <  2:3091648/91‑1 (MQ=255)

                           tactatgatggaggtattttcaataatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTAtcgt                                                                  >  2:3655616‑M1/65‑91 (MQ=255)

                            ggCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTAtcgtcg                                                                <  1:1011796/91‑1 (MQ=255)

                            ggCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTAtcgtcg                                                                <  2:1281958/91‑1 (MQ=255)

                               tttGAAAAAAGCCACGGAACAAGCGAATTTTACATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtg                                                             >  2:3817621/1‑91 (MQ=255)

                                tgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtg                                                             >  2:3596162‑M1/60‑91 (MQ=255)

                                 tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCtgtg                                                           >  1:1943539/1‑91 (MQ=255)

                                 gatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtgt                                                            >  1:1219864‑M1/59‑91 (MQ=255)

                                  tttcaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGa                                                          >  1:1214115/5‑91 (MQ=255)

                                  tttcaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGa                                                          >  1:2585035/5‑91 (MQ=255)

                                   aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGAt                                                         >  2:1051374/1‑91 (MQ=255)

                                   aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGAt                                                         >  1:1605465/1‑91 (MQ=255)

                                   aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGAt                                                         >  1:520262/1‑91 (MQ=255)

                                    aaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGAt                                                         >  2:2386644/1‑91 (MQ=255)

                                    aaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGAtt                                                        >  1:3479930/1‑91 (MQ=255)

                                      aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCg                                                      >  1:2511118/1‑91 (MQ=255)

                                      aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCg                                                      <  1:2648030/91‑1 (MQ=255)

                                       ggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCg                                                      >  1:191376‑M1/53‑91 (MQ=255)

                                       aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGt                                                     >  1:1137135/1‑91 (MQ=255)

                                        aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGtt                                                    <  1:955324/91‑1 (MQ=255)

                                          ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGtttt                                                  >  1:1931136/1‑91 (MQ=255)

                                          ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGtttt                                                  <  2:2852621/91‑1 (MQ=255)

                                           cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGttttt                                                 >  1:1647796/1‑91 (MQ=255)

                                           cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGttttt                                                 <  2:2783922/91‑1 (MQ=255)

                                           cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGttttt                                                 >  1:2942276/1‑91 (MQ=255)

                                            aCGGAACGAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTCTTa                                                <  2:3444453/91‑1 (MQ=255)

                                            aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa                                                >  2:1268549/1‑91 (MQ=255)

                                                  cAAGCGAATTTTAGATATCACATTTTTATTCCATAAT‑AAAAAAGACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc                                          <  1:3882743/91‑1 (MQ=255)

                                                     gCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt                                       <  1:1767037/91‑1 (MQ=255)

                                                       gAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttttt                                     <  2:3477942/91‑1 (MQ=255)

                                                         aTTTTTTATATAAAATTTTGATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTGAt                                   <  2:2395916/91‑1 (MQ=255)

                                                         aTTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                   <  2:2309952/91‑1 (MQ=255)

                                                          ttgtatataACACATTTTTATTCCATAAT‑AAAAAAAGCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt                                  <  2:282772/88‑1 (MQ=255)

                                                           tttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAttt                                 <  1:2691895/91‑1 (MQ=255)

                                                            ttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc                                >  1:2181358/1‑91 (MQ=255)

                                                              atatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                              <  2:2346739/91‑1 (MQ=255)

                                                              atatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTAATTCGTTTTTATTTTTCTTTTTATTTCGc                              >  1:3116544/1‑91 (MQ=255)

                                                               tatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt                             <  1:1066874/91‑1 (MQ=255)

                                                               tatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt                             >  1:3652184/1‑91 (MQ=255)

                                                                atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                            >  1:3493126/1‑91 (MQ=255)

                                                                atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                            >  1:309444/1‑91 (MQ=255)

                                                                 tatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCttt                           <  2:3631628/91‑1 (MQ=255)

                                                                 tatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCttt                           <  2:615520/91‑1 (MQ=255)

                                                                  atCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTa                          <  2:1982715/91‑1 (MQ=255)

                                                                  atCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTa                          >  2:404537/1‑91 (MQ=255)

                                                                   tCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTAc                         <  2:3196977/91‑1 (MQ=255)

                                                                   tCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTAc                         >  1:2814914/1‑91 (MQ=255)

                                                                     acaTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaa                       <  2:709022/91‑1 (MQ=255)

                                                                       aTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt                     <  2:589885/91‑1 (MQ=255)

                                                                           ttATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa                 >  1:2369134/1‑91 (MQ=255)

                                                                            tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                >  1:1041055/1‑91 (MQ=255)

                                                                            tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                >  2:3219940/1‑91 (MQ=255)

                                                                            tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                <  2:2089943/91‑1 (MQ=255)

                                                                             aTTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt               <  1:2806438/91‑1 (MQ=255)

                                                                              ttCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa              >  2:2043042/1‑91 (MQ=255)

                                                                              ttCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa              >  1:666399/1‑91 (MQ=255)

                                                                                ccATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc            <  2:875632/91‑1 (MQ=255)

                                                                                ccATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc            >  1:3531368/1‑91 (MQ=255)

                                                                                 cATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCa           <  2:1345962/91‑1 (MQ=255)

                                                                                 cATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCa           <  2:2935974/91‑1 (MQ=255)

                                                                                 cATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCa           <  2:2187389/91‑1 (MQ=255)

                                                                                  ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                              >  2:1572217/1‑55 (MQ=255)

                                                                                  ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                              <  1:1572217/55‑1 (MQ=255)

                                                                                  ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt          >  1:57656/1‑91 (MQ=255)

                                                                                     at‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt       <  2:3349438/91‑1 (MQ=255)

                                                                                         aaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGa    <  2:1943403/91‑1 (MQ=255)

                                                                                           AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATTGCATGATTGaaa  >  1:2997267‑M1/1‑91 (MQ=255)

TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAA  >  USA300TCH1516_ALE/2143280‑2143460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.