| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2201275 = | 141 (0.740) | 17 (0.110) | 10/136 | NT | 11.5% | intergenic (+5/+364) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | 2201326 = | 141 (0.870) | intergenic (+56/+313) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2201376‑2201275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAT > USA300TCH1516_ALE/2201326‑2201415 AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG > 2:1743234/1‑91AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG < 2:1859140/91‑1AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG < 2:2556272/91‑1AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG < 2:500293/91‑1 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA < 2:3128136/91‑1 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA < 2:3829966/91‑1 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA < 2:3830358/91‑1 CAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGAT < 2:3626199/91‑1 AATAGGGCTTTTTGCTGACGCTATTGCGCGATAAATAATTAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC > 1:1835414/1‑91 AATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC < 1:82820/91‑1 AATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC > 1:2185307/1‑91 ATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATGAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCT > 2:1622268/1‑91 ATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATGAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCT > 2:1622440/1‑91 TAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTT > 1:3761648/1‑91 TAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTT > 2:3707955/1‑91 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT > 1:483813/1‑91 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT > 1:483959/1‑91 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT < 2:691261/91‑1 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAAAAAGTTGAATATAAAAAAGATCACTGCCAATCATGCGTTTAATGGCAGCGATCTTT < 2:691362/91‑1 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT < 2:3305829/91‑1 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT > 1:1852568/1‑91 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT > 2:776431/1‑91 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT > 1:279202/1‑91 GCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTT > 1:813478/1‑91 GCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTT > 1:813465/1‑91 CTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTA < 2:2326243/91‑1 AATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAG > 1:3340498/1‑91 TAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCG > 1:2727198/1‑91 AAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGC > 1:1689396/1‑91 AAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGC > 1:1868486/1‑91 AAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATAATCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAgcgc > 1:1405443/1‑87 GATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATT > 2:3083012/1‑91 TCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGT > 2:34345/1‑91 TCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGT > 1:556565/1‑91 TCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGT > 2:34795/1‑91 CACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTT > 2:2697024/1‑91 CTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTT > 2:1446597/1‑91 CTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTT > 2:845556/1‑91 CAATCATTCGTTTAATGGCAGCGATCTTTTTTTTTTTTTTCTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTAT > 2:1300058/1‑91 ATCATTCGTTTAATGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAA > 1:615178/1‑91 ATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAA > 2:1122649/1‑91 ATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAA > 2:2633516/1‑91 ATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAA > 2:2633181/1‑91 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTC > 1:236867/1‑91 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTC > 2:2088551/1‑91 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAA > 1:1221984/1‑71 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAA < 2:1221984/71‑1 ATCTTTTTTTTTTTTTATTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA > 2:2703934/1‑91 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA > 2:2228949/1‑91 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA > 2:1429058/1‑91 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA > 2:1429059/1‑91 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA > 2:2705874/1‑91 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 2:3732600/91‑1 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 2:3732119/91‑1 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 1:693552/91‑1 CTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATA < 1:2874215/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTCTTGTTTTTTATAAGAACATGATACTGAAATTTCATAA > 2:570867/1‑91 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA > 1:2357399/1‑91 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA > 2:569662/1‑91 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA > 1:3164917/1‑91 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA > 1:3163850/1‑91 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA > 1:3163763/1‑91 TTTTTTATATTCAACTTATTATTTATCGCGCACTAAAATAAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 2:2058309/91‑1 TTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATTTTATCTTTATACTGAAATTTCATAAA > 2:1843668/1‑91 TTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAA > 1:533668/1‑91 TTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAA > 2:1677924/1‑91 TTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAG > 2:729147/1‑91 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 1:2513764/91‑1 TATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTT < 1:3414760/91‑1 TATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTT < 2:1181580/91‑1 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA > 1:732149/1‑91 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA > 1:731993/1‑91 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA > 2:59844/1‑91 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA > 2:2707492/1‑91 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA > 2:1990775/1‑91 TATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAT > 1:1802263/1‑91 AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2201376‑2201275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAT > USA300TCH1516_ALE/2201326‑2201415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |