| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2201275 = | 141 (0.740) | 17 (0.110) | 10/136 | NT | 11.5% | intergenic (+5/+364) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | 2201326 = | 141 (0.870) | intergenic (+56/+313) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 247 total aligned reads displayed.
TTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATT > USA300TCH1516_ALE/2201236‑2201416 | ttGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTtata < 1:318038/91‑1 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt < 1:542985/91‑1 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTc > 1:3770483/1‑91 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa > 1:915335/1‑91 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc > 1:705279/1‑91 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc > 1:1005539/1‑91 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc < 2:3416056/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 1:2248598/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 2:1261972/91‑1 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta < 2:1357445/91‑1 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:1641132/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta < 1:3752850/91‑1 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta < 1:782598/91‑1 (MQ=255) tGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattt > 2:548695/1‑91 (MQ=255) cAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttatttat > 1:2228640/1‑91 (MQ=255) aGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATc < 2:128935/91‑1 (MQ=255) aGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATc > 1:1076885/1‑91 (MQ=255) aGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATc > 2:3432129/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATCATTTATCGCGCa < 1:2993958/91‑1 (MQ=255) aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCAc < 1:2448474/91‑1 (MQ=255) aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATC‑TTTTTATATTCAACTTATTATTTATCGCGCACt < 1:322577/91‑1 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt > 2:2113661/1‑91 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt < 1:1410165/91‑1 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt < 1:3336559/91‑1 (MQ=255) aataagttgaatataaaaaagatcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAg > 1:3340498‑M2/64‑91 (MQ=255) taagttgaatataaaaaagatcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCg > 1:2727198‑M2/62‑91 (MQ=255) aaaTAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCg > 2:279202/1‑91 (MQ=255) aaaTAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCg > 1:1278451/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:3588349/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:679735/1‑91 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa > 2:3586533/1‑91 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg > 2:3788448/1‑91 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg < 2:660248/91‑1 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg < 2:221864/91‑1 (MQ=255) atTAAATATAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAGCTTATTATTTATCGCGCACTAGCGTCAGc < 2:3382458/91‑1 (MQ=255) atTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGc < 1:3864787/91‑1 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa > 1:2053995/1‑91 (MQ=255) taaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa > 2:316703/1‑91 (MQ=255) taaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa > 2:2337658/1‑91 (MQ=255) aaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaa > 2:2443479/1‑91 (MQ=255) aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa > 2:1974712/1‑91 (MQ=255) TAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAg < 2:2326243‑M1/91‑1 (MQ=255) aaaaaagatcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGc > 1:1689396‑M2/50‑91 (MQ=255) aaaaaagatcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGc > 1:1868486‑M2/50‑91 (MQ=255) AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGc > 1:813478‑M1/1‑91 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc > 2:776431‑M1/1‑91 (MQ=255) AAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCt > 1:483959‑M1/1‑91 (MQ=255) AAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTa > 2:3707955‑M1/1‑91 (MQ=255) AGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTCATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAt > 2:1622268‑M1/1‑91 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt > 1:2185307‑M1/1‑91 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTAATTATTTATCGCGCAATAGCGTCAGCAAAAAGCCCTAtt > 1:1835414‑M1/1‑91 (MQ=255) TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt < 2:3830358‑M1/91‑1 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt < 2:1859140‑M1/91‑1 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt > 2:1743234‑M1/1‑91 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt < 2:2556272‑M1/91‑1 (MQ=255) gCTGCCATTAAACGAATGACTGGCAGTGATCTTTTTTATATTCAACTTACTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt > 1:2486629/1‑91 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt > 1:277440/1‑91 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGattt > 1:3129347/1‑91 (MQ=255) gCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttttt < 2:716209/91‑1 (MQ=255) ccATTAAACGAATGATTGGCAGTGATCTTTTTTATATTAAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTta < 1:1321634/91‑1 (MQ=255) caatcattcgtttaatggcagcgatcttttttttTTTTTTCTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtat > 2:1300058‑M2/35‑91 (MQ=255) cATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtat < 2:3075163/91‑1 (MQ=255) cATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtat < 2:2449385/91‑1 (MQ=255) aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtata > 1:1044911/1‑91 (MQ=255) aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtata < 1:1571948/91‑1 (MQ=255) ttAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAACAAGCCCTATTGTTTTCTATaa > 2:3575669/1‑91 (MQ=255) atcattcgtttaatggcagtgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa > 1:615178‑M2/33‑91 (MQ=255) tAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAg < 1:3432427/91‑1 (MQ=255) attcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGaa > 2:2633181‑M2/30‑91 (MQ=255) attcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGaa > 2:1122649‑M2/30‑91 (MQ=255) aaCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGaa > 1:3349886/1‑91 (MQ=255) aaCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGaa < 1:1963296/91‑1 (MQ=255) aCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAAc > 2:2924650/1‑91 (MQ=255) aTGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGa > 2:327887/1‑91 (MQ=255) aTGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGa > 2:408801/1‑91 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:2305663/91‑1 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:264271/91‑1 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc > 2:876483/1‑91 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:956823/91‑1 (MQ=255) tGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTg > 2:2739922/1‑91 (MQ=255) ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGa < 2:1686133/91‑1 (MQ=255) gCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaa > 1:251204/1‑91 (MQ=255) cAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaaa < 1:2568085/91‑1 (MQ=255) tGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAAttt < 1:2598280/91‑1 (MQ=255) gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa > 1:1221984‑M2/13‑71 (MQ=255) gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa < 2:1221984‑M2/59‑1 (MQ=255) gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTc > 1:236867‑M2/13‑91 (MQ=255) gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTc > 2:2088551‑M2/13‑91 (MQ=255) atcttttttttTTTTTATTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCa > 2:2703934‑M2/12‑91 (MQ=255) atcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCa > 2:1429058‑M2/12‑91 (MQ=255) tcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAt < 2:3732600‑M2/81‑1 (MQ=255) cttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATa < 1:2874215‑M2/82‑1 (MQ=255) ttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATaa > 1:3163763‑M2/9‑91 (MQ=255) tatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGttt < 1:3414760‑M2/88‑1 (MQ=255) tatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGttt < 2:1181580‑M2/88‑1 (MQ=255) atATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTa > 1:731993‑M2/3‑91 (MQ=255) atATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTa > 2:59844‑M2/3‑91 (MQ=255) atATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTa > 2:1990775‑M2/3‑91 (MQ=255) tATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAt > 1:1802263‑M2/2‑91 (MQ=255) atTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGtttatt < 1:2263080/91‑1 (MQ=255) | TTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATT > USA300TCH1516_ALE/2201236‑2201416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |