| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2201275 = | 141 (0.740) | 17 (0.110) | 10/136 | NT | 11.5% | intergenic (+5/+364) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | 2201326 = | 141 (0.870) | intergenic (+56/+313) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 300 total aligned reads displayed.
TTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAA > USA300TCH1516_ALE/2201185‑2201364 | tttCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAA > 2:1201304‑M1/1‑91 (MQ=255)tttCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAA > 1:2973442‑M1/1‑91 (MQ=255)ataaactttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaata > 1:1802263‑M1/91‑91 (MQ=255) taaactttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatat > 1:732149‑M1/90‑91 (MQ=255) tCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATA < 2:3284098‑M1/91‑1 (MQ=255) cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA > 1:3863809‑M1/1‑91 (MQ=255) cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA > 2:2251055‑M1/1‑91 (MQ=255) cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA < 1:3377444‑M1/91‑1 (MQ=255) acaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAA < 2:2358091‑M1/91‑1 (MQ=255) ctttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaa > 2:729147‑M1/86‑91 (MQ=255) ttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaaaa > 2:569662‑M1/84‑91 (MQ=255) ttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaaaa > 1:3163850‑M1/84‑91 (MQ=255) tatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAg < 1:2874215‑M1/9‑1 (MQ=255) atgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGa < 2:3732600‑M1/10‑1 (MQ=255) atgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGa < 1:693552‑M1/10‑1 (MQ=255) tgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGAt > 2:1429058‑M1/81‑91 (MQ=255) tgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGAt > 2:2705874‑M1/81‑91 (MQ=255) gaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATc > 1:236867‑M1/80‑91 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC < 1:1468113‑M1/91‑1 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC < 1:302168‑M1/91‑1 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC < 1:2248903‑M1/91‑1 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC > 2:813478‑M1/1‑91 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC > 2:1041574‑M1/1‑91 (MQ=255) tGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGc < 1:1910824/91‑1 (MQ=255) gACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGcc > 2:2874215/1‑91 (MQ=255) aCGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCa < 1:1158910/91‑1 (MQ=255) cAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATAAAATAAAAAAGATCGCTGCCATTa > 1:3230898/1‑91 (MQ=255) aaaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTaaa > 2:1347484/1‑91 (MQ=255) aaaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTaaa < 1:3480279/91‑1 (MQ=255) gATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATACTTAAATAAAAAAGATCGCTGCCATTAAACGa < 1:593809/91‑1 (MQ=255) gATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGa > 2:528890/1‑91 (MQ=255) attattAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATg > 2:2598280/1‑91 (MQ=255) tattaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAt > 2:1936259/1‑91 (MQ=255) tattaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAt > 1:3410856/1‑91 (MQ=255) attaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGCAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAtt > 2:2693371/1‑91 (MQ=255) aaaaCACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggc < 1:3422496‑M1/91‑25 (MQ=255) aaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAg > 2:1446597‑M1/54‑91 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagc < 2:3673464‑M1/91‑28 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagc < 1:1190329‑M1/91‑28 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 2:919196/91‑1 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 1:2306367/91‑1 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcg < 1:2193836‑M1/91‑29 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 1:2789664‑M2/1‑90 (MQ=255) acaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGa > 1:556565‑M1/51‑91 (MQ=255) acaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGa > 2:34345‑M1/51‑91 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 1:1759926‑M2/91‑3 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 1:969216‑M2/91‑3 (MQ=255) caTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcgat < 1:2007714‑M1/91‑31 (MQ=255) aTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcgatc < 2:2041791‑M1/91‑32 (MQ=255) tCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtt < 1:1374710‑M1/76‑18 (MQ=255) tCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtt > 2:1374710‑M1/1‑59 (MQ=255) ccACGCATTGGTTATCATATGTTGCAGTGGAACGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATTATTGGCAGTgatctt > 1:3317828‑M2/1‑85 (MQ=255) cACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcgatcttt < 1:1223943‑M1/91‑35 (MQ=255) cACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttt < 1:1733418‑M2/91‑8 (MQ=255) cACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttt > 1:513217‑M2/1‑84 (MQ=255) aCGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcgatctttt < 2:903115‑M1/91‑36 (MQ=255) aCGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctttt < 2:3033902‑M2/91‑9 (MQ=255) aCGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctttt < 2:1835414‑M2/91‑9 (MQ=255) cGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttt > 2:1605186‑M2/1‑82 (MQ=255) cGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttt > 2:2014782‑M2/1‑82 (MQ=255) gctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCtttttt > 1:1689396‑M1/43‑91 (MQ=255) gCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctttttt > 2:2814202‑M2/1‑81 (MQ=255) cATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctttttta < 1:630501‑M2/91‑12 (MQ=255) ttGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTtata < 1:318038/91‑1 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt < 2:1703535/91‑1 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCtctgccattcattcgtttaatggcagcgatcttttttatttaa < 2:2228564‑M1/91‑44 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTc < 1:2482234/91‑1 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcgatcttttttatttaat < 1:1329251‑M1/91‑45 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa < 1:868875/91‑1 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc < 2:3416056/91‑1 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc > 1:1005539/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 1:2549317/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 2:1252678/91‑1 (MQ=255) cgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtta > 1:2727198‑M1/31‑91 (MQ=255) aaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttat < 1:3765124/91‑1 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:1676099/1‑91 (MQ=255) ttGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTattatt > 1:3722846/1‑91 (MQ=255) tGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattt < 2:1271185/91‑1 (MQ=255) gCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattta > 1:3559086/1‑91 (MQ=255) cAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttatttat > 1:2228640/1‑91 (MQ=255) cAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttatttat < 2:1180192/91‑1 (MQ=255) gTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcg < 1:3781173/91‑1 (MQ=255) gTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcg > 2:2513764/1‑91 (MQ=255) ggAAAAAGAAATAATTAAATAAAAAAGATCGCTGTCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcgcg < 2:3584135/91‑1 (MQ=255) gAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgc < 2:2324715/91‑1 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt > 2:2113661/1‑91 (MQ=255) aaaTAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCg > 2:275465/1‑91 (MQ=255) aaaTAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCg > 1:1278451/1‑91 (MQ=255) aataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGt < 1:774905/91‑1 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa > 1:729163/1‑91 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg < 2:1986187/91‑1 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg > 2:3788448/1‑91 (MQ=255) atTAAATATAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAGCTTATTATTTATCGCGCACTAGCGTCAGc < 2:3382458/91‑1 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa > 1:2053995/1‑91 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa < 1:2114479/91‑1 (MQ=255) taaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa > 1:1421110/1‑91 (MQ=255) taaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa > 2:316703/1‑91 (MQ=255) aaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaa > 2:648069/1‑91 (MQ=255) aaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaa > 2:2443479/1‑91 (MQ=255) aaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTGATTATTTATCGCGCACTAGCGTCAGCaaa > 1:3109822/1‑91 (MQ=255) | TTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAA > USA300TCH1516_ALE/2201185‑2201364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |