| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2245371 | 175 (0.920) | 32 (0.190) | 16/144 | NT | 16.7% | intergenic (‑230/+106) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta |
| ? | USA300TCH1516_ALE | = 2245389 | 163 (0.950) | intergenic (‑248/+88) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta | |||||
CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2245274‑2245371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgctcccCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATAT < USA300TCH1516_ALE/2245389‑2245302 CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAA > 1:2188439/1‑91 CGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAAC < 2:1333861/91‑1 CGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAAC < 1:3673867/91‑1 CGTTTCCATACTGCGATGTCACTGAGTATATCATTTACAACTTGGATTTTTGCGGTATCATTTCTTGATTTACTCAATTAAATGAAAAAAC < 2:3612679/91‑1 GTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACG < 1:1727141/91‑1 GTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACG < 1:1727451/91‑1 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC > 2:2775075/1‑91 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC > 2:2775584/1‑91 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTAAATTAAATAAAAAAACGC < 2:1581986/91‑1 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTTTCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT < 1:3270243/91‑1 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 2:2515495/1‑91 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT < 1:3270163/91‑1 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 1:335529/1‑91 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 1:3576658/1‑91 TCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTTCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTC > 2:2933981/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 1:2323505/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTATTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACTCTCC < 1:3066210/91‑1 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCTTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC > 2:528169/1‑91 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTTCTCAATTAAATAAAAAAACGCTCCC > 2:3767101/1‑91 ACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGT < 2:1389262/91‑1 CTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTG < 1:1311191/91‑1 ATGTATATCATTTACAAGTTTGATTCATGCGTTAACATTTCTTGATTTACTCGCTTAAATAAGAAAACGCTCCCCTTACAGAATTTGTGAG < 2:801097/91‑1 ATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAG < 2:801547/91‑1 ATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAG < 2:1201951/91‑1 ATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAG < 2:2702594/91‑1 ATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAG < 1:2311405/91‑1 ATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAG < 1:2311313/91‑1 TGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACTGAATTTGTGAGA < 1:2997821/91‑1 TGTATATCATTTACAACTTTGATGTTTGCGTTATCATTTCTTGATTTACTCAATTAAATGAAAAAACGCTCCCCTTACAGAATTTGTGAGA < 2:2967574/91‑1 GTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAG < 1:939875/91‑1 TATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGG < 1:2024928/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:1327061/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 1:451511/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:2370269/91‑1 ATATCATTTACAACTTTGATTATTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAAAATTTGTGAGAGGG < 2:2600188/91‑1 TATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAGAACGCTCCCCTTACAGAATTTGTGAGAGGGA < 1:3213763/91‑1 TATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGA < 2:397208/91‑1 TATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGA < 2:391841/91‑1 TATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGA < 1:2956070/91‑1 TCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGC < 1:1552160/91‑1 CATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCG < 1:2721953/91‑1 TTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTT < 1:2212608/91‑1 TACAACTTTGATTTTTGCGTTATCGTTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTT < 2:2624012/91‑1 TACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTT < 1:762834/91‑1 TACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTT < 1:761857/91‑1 CAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTT < 2:1393014/91‑1 AACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTT < 1:2489724/91‑1 ACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTA < 2:3393625/91‑1 ACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGGGAGAGGGAGCGTTTTTTTA < 2:3394682/91‑1 ACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGGGAGAGGGAGCGTTTTTTTA < 2:3393877/91‑1 ATAAAAAACCGCTCGCCTTACAGAATTTGTGGGAGGGAGCGTTTTTTTATATAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAG < 1:704714/91‑1 ACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 2:2317754/1‑91 ACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 1:731241/1‑91 ACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 1:1577613/1‑91 ACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 2:2316272/1‑91 ACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 2:2019251/1‑91 CGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 2:933713/1‑91 CGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:273380/1‑91 CGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 2:2018234/1‑91 aCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTACTTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA > 2:2991184/2‑91 aCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTACTTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA > 2:2990972/2‑91 GCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA < 1:492428/91‑1 CTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGAT > 2:3370885/1‑91 CTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGAT < 2:1011039/91‑1 CCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATAT < 1:3030751/91‑1 CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2245274‑2245371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgctcccCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATAT < USA300TCH1516_ALE/2245389‑2245302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |