| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2252589 = | 178 (0.930) | 15 (0.090) | 10/142 | NT | 9.5% | intergenic (+25/+127) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2252638 = | 128 (0.760) | intergenic (+74/+78) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein | |||||
AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2252687‑2252589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > USA300TCH1516_ALE/2252638‑2252727 AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGA < 1:3144529/91‑1AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGA < 1:3145934/91‑1AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGA > 2:1385679/1‑91AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGA > 2:2296492/1‑91 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 2:1132907/91‑1 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC > 2:1448285/1‑91 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 1:2333066/91‑1 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 2:2448168/91‑1 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 2:1620482/91‑1 AAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGAC < 2:524767/91‑1 AGATTTTACTTTTTCATTTGTTCGATTTTTTGCCTTTGAAGCATAATAAAAAGAAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACT > 2:2103025/1‑91 AGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACT < 2:1326825/91‑1 AGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACT < 2:1942502/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:3433036/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:3433035/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTG < 1:3432853/91‑1 GATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCAGAATAAAAAGCAGTTGAACAATGGCGATTGTAAAATCATTGTTCGACTG < 2:3804063/91‑1 ATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 2:2206697/91‑1 ATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 1:851312/91‑1 ATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 2:175593/91‑1 ATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 2:3366823/91‑1 ATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGC < 2:3730916/91‑1 TTTTACTTTTTCATTTGTTCGATTTTTTGTCTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCT < 1:1433800/91‑1 TTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCT < 1:2804899/91‑1 TTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCT < 1:2804606/91‑1 TTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGAACAATGGCGATTGTAAAATCATTGTTCGACTGCT < 2:3525448/91‑1 TTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGAACAATGGCGATTGTAAAATCATTGTTCGACTGCT < 2:3525557/91‑1 TTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAAT‑AAAGGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTT < 2:658221/91‑1 TTACTTTTTTTTTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTT > 2:366267/1‑91 TTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTT < 1:1590717/91‑1 TTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTT < 1:168884/91‑1 TTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTT < 2:2752235/91‑1 TTACTATTTCATTTGTACGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACTATGGCGATTGTAAAATCATTGTTCGACTGCTTT > 2:1176912/1‑91 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 2:126742/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 2:126894/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 2:1340418/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 1:3177398/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT < 2:154604/91‑1 TACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT > 2:3118150/1‑91 ATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAA > 1:3526849/1‑91 TAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAA > 1:2031630/1‑91 TAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAA > 1:2031226/1‑91 TAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAA > 1:3117976/1‑91 TAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAG > 2:750737/1‑91 AAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTA > 1:54465/1‑91 AAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAATAAATCGAACTAATGAAAAAGTAA > 2:2964162/1‑91 AAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGCACAACTGAAAAAGTAAA > 2:1111111/1‑91 AAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAA > 2:3728774/1‑91 GCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAAT > 2:3392363/1‑91 TGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTA > 1:3502948/1‑91 TGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTA > 1:3391431/1‑91 TGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTA > 1:3391324/1‑91 GGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCAAACAAATGAAAAAGTAAAATCTTTAA > 1:14578/1‑91 GACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAAC > 2:1573787/1‑91 ccagCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAC < 1:863674/87‑1 ACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTAT > 2:965974/1‑91 ACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTAT < 1:2625390/91‑1 ACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTAT < 1:912354/91‑1 CTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATA > 1:1533242/1‑91 CTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATA < 1:307643/91‑1 CTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTCAACATTTGTCCGATTTATTTGAGAACCACTATA > 1:182573/1‑91 TGCTTTTTATTATGCTTCAAAGTCACAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA < 1:3627807/91‑1 TGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA < 1:3395636/91‑1 TGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA < 1:467972/91‑1 TGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAA < 2:1955642/91‑1 CTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATT > 2:2382360/1‑91 CTTTTTATTATGCTTCAAAGTCAAAAAATCAAAAAAAAAAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATT < 2:2683922/91‑1 CTTTTTATTATGCTTCAAAGTCAAAAAAGCGAAAAAAAAAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATT < 2:3622163/91‑1 TTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTT > 1:3407052/1‑91 TTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTT < 1:23660/91‑1 TTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTT < 2:1597537/91‑1 TTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATTAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAaatt < 2:3058766/91‑5 TTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTC < 2:617993/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 1:1327333/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 1:1080904/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 1:137796/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 2:657287/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 1:138587/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 2:1648969/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT < 2:3877624/91‑1 TTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCT > 2:2013324/1‑91 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > 1:2960482/1‑91 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > 1:2960565/1‑91 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > 1:2960652/1‑91 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT < 1:3017503/91‑1 TTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > 1:3665173/1‑91 AAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAATCATTGTTCGACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2252687‑2252589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTT > USA300TCH1516_ALE/2252638‑2252727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |