New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2252589 =178 (0.930)15 (0.090) 10/142 NT 9.5% intergenic (+25/+127) luxS/USA300HOU_RS11525 S‑ribosylhomocysteine lyase/hypothetical protein
?USA300TCH1516_ALE 2252638 = 128 (0.760)intergenic (+74/+78) luxS/USA300HOU_RS11525 S‑ribosylhomocysteine lyase/hypothetical protein

Only 100 of 273 total aligned reads displayed.

ACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTA  >  USA300TCH1516_ALE/2252499‑2252679
                                                                                          |                                                                                          
aagaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataa                                                                                            <  1:3017503‑M1/1‑1 (MQ=255)
aagaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataa                                                                                            >  1:2960565‑M1/91‑91 (MQ=255)
aCTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGa                                                                                            <  2:1732165/91‑1 (MQ=255)
aCTATCGCTCAAGAATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGa                                                                                            >  2:1152843/1‑91 (MQ=255)
 agaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaa                                                                                           <  1:1080904‑M1/2‑1 (MQ=255)
 agaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaa                                                                                           <  1:1327333‑M1/2‑1 (MQ=255)
 agaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaa                                                                                           <  1:137796‑M1/2‑1 (MQ=255)
 agaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaa                                                                                           <  2:657287‑M1/2‑1 (MQ=255)
  gaaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaaa                                                                                          <  2:617993‑M1/3‑1 (MQ=255)
  aattttatagtggttctcaaataaatcggacaaatgttaaagattttactttttaatttgttcgattttttgactttgaagcataataaaa                                                                                          <  2:3058766‑M1/3‑1 (MQ=255)
   aaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaaaa                                                                                         >  1:3407052‑M1/88‑91 (MQ=255)
   aaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaaaa                                                                                         <  2:1597537‑M1/4‑1 (MQ=255)
   aaattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataaaaa                                                                                         <  1:23660‑M1/4‑1 (MQ=255)
    tCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAg                                                                                        >  1:23258/1‑91 (MQ=255)
    tCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAg                                                                                        <  2:2492490/91‑1 (MQ=255)
    aattatagtggttctcaaataaatcggacaaatgttaaagattttacttttttttttttttgattttttgactttgaagcataataAAAAg                                                                                        <  2:2683922‑M1/5‑1 (MQ=255)
    aattatagtggttctcaaataaatcggacaaatgttaaagattttactttttttttttttcgcttttttgactttgaagcataataAAAAg                                                                                        <  2:3622163‑M1/5‑1 (MQ=255)
    aattatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAg                                                                                        >  2:2382360‑M1/87‑91 (MQ=255)
     cGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGc                                                                                       <  1:1864525/91‑1 (MQ=255)
     cGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGATACAGGAAAATAAATCTTAGTCAATCAAGCTAATCAGAAAAGc                                                                                       >  1:3877624/1‑91 (MQ=255)
      ttatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCa                                                                                      <  2:1955642‑M1/7‑1 (MQ=255)
      ttatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCa                                                                                      <  1:467972‑M1/7‑1 (MQ=255)
      gCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCa                                                                                      >  1:3533885/1‑91 (MQ=255)
       tatagtggttctcaaataaatcggacaaatgttgaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCAg                                                                                     >  1:182573‑M1/84‑91 (MQ=255)
       tatagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCAg                                                                                     <  1:307643‑M1/8‑1 (MQ=255)
        atagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCAGt                                                                                    <  1:2625390‑M1/9‑1 (MQ=255)
        atagtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCAGt                                                                                    <  1:912354‑M1/9‑1 (MQ=255)
          aaGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCg                                                                                  <  2:3172829/91‑1 (MQ=255)
          aaGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCg                                                                                  >  1:1349159/1‑91 (MQ=255)
           gtggttctcaaataaatcggacaaatgttaaagattttactttttcatttgttcgattttttgactttgaagcataataAAAagcagctgg                                                                                 <  1:863674‑M1/12‑5 (MQ=255)
           aGCATTTCTAGACAAACGAAACGAATTGCATGATGTTTTCGATACATGAAAATAAAACTTAGTCAATCAAGTTAACCAGAAAAGCAGTCGa                                                                                 <  2:458767/91‑1 (MQ=255)
           aGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGa                                                                                 <  2:2810139/91‑1 (MQ=255)
           aGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGa                                                                                 >  1:72807/1‑91 (MQ=255)
            gCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGaa                                                                                <  2:349749/91‑1 (MQ=255)
            gCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGaa                                                                                <  2:1110213/91‑1 (MQ=255)
            gCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGaa                                                                                >  2:257335/1‑91 (MQ=255)
              aTTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACa                                                                              <  1:3287124/91‑1 (MQ=255)
              aTTTCAAGACAAACGAAACGAATGGCATGATGTTTTCGGGACAGGAAAATAAAACTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACa                                                                              <  1:3615319/91‑1 (MQ=255)
               tttCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACaa                                                                             <  2:1390724/91‑1 (MQ=255)
                 tCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATg                                                                           >  1:761712/1‑91 (MQ=255)
                    aGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGAtt                                                                        <  2:1223474/91‑1 (MQ=255)
                    aGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGAtt                                                                        >  2:749939/1‑91 (MQ=255)
                        aaacgaaacgAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTAc                                                                    >  1:1016441/1‑91 (MQ=255)
                          acgaaacgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACaa                                                                  >  1:2870325/1‑91 (MQ=255)
                           cgaaacgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAAt                                                                 >  1:2683922/1‑91 (MQ=255)
                            gaaacgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAACGCAGTCGAACAATGATTTTACAATc                                                                >  1:3635210/1‑91 (MQ=255)
                             aaacgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCg                                                               >  1:1546883/1‑91 (MQ=255)
                              aacgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGc                                                              >  1:2083756/1‑91 (MQ=255)
                              aacgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTATACAATCGc                                                              >  1:3722363/1‑91 (MQ=255)
                               acgaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGcc                                                             >  1:1441551/1‑91 (MQ=255)
                                 gaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCAt                                                           >  1:3118150/1‑91 (MQ=255)
                                 gaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCAt                                                           >  1:3666537/1‑91 (MQ=255)
                                 gaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCAt                                                           >  1:207538/1‑91 (MQ=255)
                                 gaaTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCAt                                                           <  1:626186/91‑1 (MQ=255)
                                   aTGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTg                                                         >  2:912354/1‑91 (MQ=255)
                                     ggCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTc                                                       <  2:3828278/91‑1 (MQ=255)
                                      ttaaagattttactttttcatttgtttgattttttgactttgaagcataataAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTcc                                                      >  1:14578‑M1/53‑91 (MQ=255)
                                      gCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTcc                                                      >  2:1829989/1‑91 (MQ=255)
                                       taaagattttactttttcatttgttcgattttttgactttgaagcataataAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCa                                                     >  1:3391431‑M1/52‑91 (MQ=255)
                                       cATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCa                                                     >  2:23660/1‑91 (MQ=255)
                                       cATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCa                                                     >  1:1597537/1‑91 (MQ=255)
                                        atgatgTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCaa                                                    >  2:1327333/1‑91 (MQ=255)
                                            tgTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGc                                                <  2:988533/91‑1 (MQ=255)
                                            tgTTTTCGGTACAGGAAAATAAATCTTAGCCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGACCAACTGc                                                >  2:3371607/1‑91 (MQ=255)
                                             gTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCt                                               >  2:2205270/1‑91 (MQ=255)
                                              tttactttttcatttgttcgattttttgactttgaagcataataAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCtt                                              >  2:3728774‑M1/45‑91 (MQ=255)
                                                 tCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAATGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCttttt                                           <  1:3095841/91‑1 (MQ=255)
                                                     tttcatttgttcgattttttgactttgaagcataataAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTttatta                                       >  1:2031630‑M1/38‑91 (MQ=255)
                                                       cAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATg                                     <  1:683688/91‑1 (MQ=255)
                                                          gAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCtt                                  <  1:562485/91‑1 (MQ=255)
                                                            aaataaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCa                                <  1:249542/91‑1 (MQ=255)
                                                                aaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGt                            <  2:2132118/91‑1 (MQ=255)
                                                                aaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGt                            <  1:3519601/91‑1 (MQ=255)
                                                                 aatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTc                           >  1:2951583/1‑91 (MQ=255)
                                                                 aatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTc                           >  1:1678280/1‑91 (MQ=255)
                                                                   tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                         >  1:188586/1‑91 (MQ=255)
                                                                   tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                         >  2:3213734/1‑91 (MQ=255)
                                                                   tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                         <  1:1793684/91‑1 (MQ=255)
                                                                   tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                         <  1:1524916/91‑1 (MQ=255)
                                                                   tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                         <  1:1199154/91‑1 (MQ=255)
                                                                    cTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaaa                        <  2:2330373/91‑1 (MQ=255)
                                                                      tAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAA                      >  1:2958042‑M1/1‑91 (MQ=255)
                                                                          caatcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCG                  >  2:440081‑M1/1‑91 (MQ=255)
                                                                           aatcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGa                 >  2:1529140/1‑91 (MQ=255)
                                                                            atcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCACAGTCAAAAAATCGca                >  2:3314731‑M1/1‑89 (MQ=255)
                                                                            atcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGaa                <  1:2255135/91‑1 (MQ=255)
                                                                              caaGATAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACa              <  2:2155196/91‑1 (MQ=255)
                                                                              aaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTAAAAAAACAAAAAATCGAACa              <  2:2933570/90‑1 (MQ=255)
                                                                                aGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaa            >  2:3604304‑M1/1‑85 (MQ=255)
                                                                                   tAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGa         <  1:326239/91‑1 (MQ=255)
                                                                                   tAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGa         >  2:450700/1‑91 (MQ=255)
                                                                                    aaTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaa        >  1:2799433/1‑91 (MQ=255)
                                                                                    aaTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaa        >  2:142439/1‑91 (MQ=255)
                                                                                    aaTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaa        >  1:1061231/1‑91 (MQ=255)
                                                                                     aTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGaa                >  2:2861427/1‑82 (MQ=255)
                                                                                     aTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaaa       >  1:3799154/1‑91 (MQ=255)
                                                                                        aGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAg    <  2:1015984/91‑1 (MQ=255)
                                                                                          AAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTa  >  2:3118150‑M1/1‑91 (MQ=255)
                                                                                          AAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTa  <  2:126742‑M1/91‑1 (MQ=255)
                                                                                          AAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTa  <  2:1340418‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
ACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTA  >  USA300TCH1516_ALE/2252499‑2252679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.