BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2252589 =	178 (0.930)	15 (0.090)	10/142	NT	9.5%	intergenic (+25/+127)	luxS/USA300HOU_RS11525	S‑ribosylhomocysteine lyase/hypothetical protein
*	?	USA300TCH1516_ALE	2252638 =	128 (0.760)	15 (0.090)	10/142	NT	9.5%	intergenic (+74/+78)	luxS/USA300HOU_RS11525	S‑ribosylhomocysteine lyase/hypothetical protein

Only 100 of 284 total aligned reads displayed.

TCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTA  >  USA300TCH1516_ALE/2252548‑2252728

tCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAATGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCttttt                                                                                            <  1:3095841/91‑1 (MQ=255)

  ggTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTttat                                                                                          <  2:2347607/91‑1 (MQ=255)

  ggTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATGTTACAATCTCCATTGTCCAACTGCTTTttaa                                                                                          >  1:3273607/1‑90 (MQ=255)

   gTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTttatt                                                                                         >  2:2784520/1‑91 (MQ=255)

    tttcatttgttcgattttttgactttgaagcataataAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTttatta                                                                                        >  1:2031226‑M1/38‑91 (MQ=255)

    tACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTttatta                                                                                        >  2:1709350/1‑91 (MQ=255)

    tACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTttatta                                                                                        <  1:3874463/91‑1 (MQ=255)

      cAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATg                                                                                      >  1:3479578/1‑91 (MQ=255)

      cAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATg                                                                                      <  2:2499180/91‑1 (MQ=255)

       aGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGc                                                                                     <  2:2900246/91‑1 (MQ=255)

         gAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCtt                                                                                   >  1:2330373/1‑91 (MQ=255)

            aataaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCaa                                                                                >  2:1227050/1‑91 (MQ=255)

              taaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCaatg                                                                              <  1:591693/91‑3 (MQ=255)

               aaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGt                                                                             <  2:2859561/91‑1 (MQ=255)

               aaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGt                                                                             <  2:2132118/91‑1 (MQ=255)

               aaatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGt                                                                             <  1:3519601/91‑1 (MQ=255)

                aatCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCCTTGTCCAACTGCTTTTTATTATGCTTCAAAGTc                                                                            >  1:3185786/1‑91 (MQ=255)

                  tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                                                                          >  1:188586/1‑91 (MQ=255)

                  tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                                                                          <  1:1355105/91‑1 (MQ=255)

                  tCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCaa                                                                          <  1:1524916/91‑1 (MQ=255)

                     tAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAA                                                                       >  1:2957680‑M1/1‑91 (MQ=255)

                         caatcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCG                                                                   >  2:440080‑M1/1‑91 (MQ=255)

                         caatcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCG                                                                   >  2:440226‑M1/1‑91 (MQ=255)

                          aatcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGa                                                                  >  1:2984952/1‑91 (MQ=255)

                           atcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCACAGTCAAAAAATCGca                                                                 >  2:3314731‑M1/1‑89 (MQ=255)

                           atcaaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGaa                                                                 <  1:904481/91‑1 (MQ=255)

                             caaGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACa                                                               <  2:23258/91‑1 (MQ=255)

                               aGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaa                                                             >  2:3604304‑M1/1‑85 (MQ=255)

                                  tAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGa                                                          <  1:2275695/91‑1 (MQ=255)

                                   aaTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaa                                                         >  1:1061717/1‑91 (MQ=255)

                                   aaTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaa                                                         >  2:1473380/1‑91 (MQ=255)

                                   aaTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaa                                                         >  2:139755/1‑91 (MQ=255)

                                    taataaaaagcagttggacaatggcgattgtaaaatcattgttcgactgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaaa                                                        >  1:2031630‑M2/55‑91 (MQ=255)

                                    aTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaaa                                                        >  1:3799154/1‑91 (MQ=255)

                                    aTCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGaaa                                                        >  1:1337061/1‑91 (MQ=255)

                                       aGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAg                                                     <  2:1015984/91‑1 (MQ=255)

                                        gAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGt                                                    <  1:139342/91‑1 (MQ=255)

                                        gAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGt                                                    >  1:1811128/1‑91 (MQ=255)

                                         AAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTa                                                   <  2:126894‑M1/91‑1 (MQ=255)

                                         AAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTa                                                   >  2:3118150‑M1/1‑91 (MQ=255)

                                         AAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTa                                                   <  2:154604‑M1/91‑1 (MQ=255)

                                          aaagcagttggacaatggcgattgtaaaatcattgttcgactgcttttTATTATGCTTCAAAGTCAATAAATCGAACTAATGAAAAAGTaa                                                  >  2:2964162‑M2/49‑91 (MQ=255)

                                           AAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCCTTT‑ATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTaaaa                                                <  2:658221‑M1/91‑1 (MQ=255)

                                            AGCAGTCGAACAATGATTTTACAATCGCCATTGTTCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTaaaa                                                <  2:3525557‑M1/91‑1 (MQ=255)

                                            AGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTaaaa                                                <  1:2804606‑M1/91‑1 (MQ=255)

                                             GCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAAt                                               <  2:3730916‑M1/91‑1 (MQ=255)

                                             GCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAAt                                               <  2:2206697‑M1/91‑1 (MQ=255)

                                              CAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATc                                              <  1:3432853‑M1/91‑1 (MQ=255)

                                                 TCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCttt                                           <  1:3144529‑M1/91‑1 (MQ=255)

                                                  tggacaatggcgattgtaaaatcattgttcgactgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTa                                          >  1:3391431‑M2/41‑91 (MQ=255)

                                                  cGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTa                                          <  2:1349159/91‑1 (MQ=255)

                                                   gAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTaa                                         <  2:564213/91‑1 (MQ=255)

                                                   gAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTaa                                         <  1:119042/91‑1 (MQ=255)

                                                      cAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACAt                                      <  1:2744730/91‑1 (MQ=255)

                                                          gATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGt                                  >  1:1648969/1‑91 (MQ=255)

                                                          gATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGt                                  <  1:2121843/91‑1 (MQ=255)

                                                          gATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGt                                  <  1:1438047/91‑1 (MQ=255)

                                                          gATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAATCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGt                                  <  2:1154444/91‑1 (MQ=255)

                                                            ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaatgttaaagattttactttttcatttgttc                                <  1:1043972‑M1/91‑36 (MQ=255)

                                                            ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                >  1:2839760‑M2/1‑90 (MQ=255)

                                                            ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                >  2:902747‑M2/1‑90 (MQ=255)

                                                            ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                >  2:3666537‑M2/1‑90 (MQ=255)

                                                            ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                >  1:1829989‑M2/1‑90 (MQ=255)

                                                            ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                >  1:842304‑M2/1‑90 (MQ=255)

                                                              ttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcga                              >  1:2551895‑M2/1‑88 (MQ=255)

                                                               tACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgat                             <  2:2560684‑M2/91‑5 (MQ=255)

                                                                aCAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaatgttaaagattttactttttcatttgttcgatt                            <  2:1119818‑M1/91‑40 (MQ=255)

                                                                aCAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaatgttaaagattttactttttcatttgttcgatt                            <  2:1953469‑M1/91‑40 (MQ=255)

                                                                 cAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattt                           >  1:2473640‑M2/1‑85 (MQ=255)

                                                                  aaTCGCCATTGTCCAACTGCTTTTTTTTTTTTTTTTTAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgatttt                          <  2:2729779‑M2/91‑8 (MQ=255)

                                                                  aaTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGattta                          >  1:674585/1‑91 (MQ=255)

                                                                  aaTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGattta                          >  2:3248058/1‑91 (MQ=255)

                                                                    tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaatgttaaagattttactttttcatttgttcgatttttt                        <  1:3604304‑M1/91‑44 (MQ=255)

                                                                    tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGgacaaatgttaaagattttactttttcatttgttcgatttttt                        <  1:3283583‑M1/91‑44 (MQ=255)

                                                                    tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttatt                        <  2:205883/91‑1 (MQ=255)

                                                                    tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttatt                        <  1:575098/91‑1 (MQ=255)

                                                                    tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttatt                        >  1:1000446/1‑91 (MQ=255)

                                                                     cGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGACAAAGTAAAATCTTTAACATTTGTCCGatttattt                       >  2:1837889/1‑91 (MQ=255)

                                                                     cGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttattt                       >  1:13636/1‑91 (MQ=255)

                                                                         aTTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTgaga                   >  1:1166656/1‑91 (MQ=255)

                                                                          ttGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTgagag                  >  2:3845626/1‑90 (MQ=255)

                                                                           tGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAc                 >  2:3395636/1‑91 (MQ=255)

                                                                            gTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAcc                <  1:704331/91‑1 (MQ=255)

                                                                            gTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAcc                >  1:1898058/1‑91 (MQ=255)

                                                                              ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc              <  1:3544111/91‑1 (MQ=255)

                                                                               cAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACt             <  1:1473380/91‑1 (MQ=255)

                                                                               cAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACt             <  2:3799154/91‑1 (MQ=255)

                                                                                aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta            >  1:1721124/1‑91 (MQ=255)

                                                                                  ctgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACtata          >  1:1533242‑M2/9‑91 (MQ=255)

                                                                                  ctgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACtata          <  1:307643‑M2/83‑1 (MQ=255)

                                                                                   tgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATaa         <  1:467972‑M2/84‑1 (MQ=255)

                                                                                     cttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAtt       >  2:2382360‑M2/6‑91 (MQ=255)

                                                                                      ttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAttt      <  2:1597537‑M2/87‑1 (MQ=255)

                                                                                       tttTATTATGCTTCAAAGTCAAAAAATCGAACAAATTAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCActataaaatt     <  2:3058766‑M2/88‑5 (MQ=255)

                                                                                       tttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTc     <  2:617993‑M2/88‑1 (MQ=255)

                                                                                        ttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCt    <  1:1327333‑M2/89‑1 (MQ=255)

                                                                                        ttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCt    >  2:2013324‑M2/3‑91 (MQ=255)

                                                                                         tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt   >  1:2960565‑M2/2‑91 (MQ=255)

                                                                                         tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt   >  1:3665173‑M2/2‑91 (MQ=255)

                                                                                          tattatGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTa  <  2:859954/91‑1 (MQ=255)

TCGGTACAGGAAAATAAATCTTAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTA  >  USA300TCH1516_ALE/2252548‑2252728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.