| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2252663 | 137 (0.720) | 13 (0.070) | 7/148 | NT | 8.4% | intergenic (+99/+53) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2252697 | 158 (0.900) | intergenic (+133/+19) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein | |||||
TAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2252569‑2252663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcgGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA < USA300TCH1516_ALE/2252697‑2252608 TAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AA > 1:2958042/1‑91TAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AA > 1:2957680/1‑91 TCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATC > 2:3018478/1‑91 TCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATC > 2:1364787/1‑91 CAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCACAGTCAAA‑AAATCG > 2:3100291/1‑91 CAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCG > 2:440226/1‑91 CAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCG > 2:440080/1‑91 CAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCG > 2:440081/1‑91 AATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATtga > 1:1722129/1‑88 ATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCACAGTCAAA‑AAATCGca > 2:3314731/1‑89 AGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAA > 2:3604304/1‑91 TTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTC < 1:1043972/91‑1 TTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGA < 2:900384/91‑1 TTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGA < 2:901398/91‑1 TACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTTAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGAT < 1:3865864/91‑1 ACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT < 2:1953469/91‑1 ACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT < 2:1546510/91‑1 ACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT < 2:1119818/91‑1 ACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT < 1:3502146/91‑1 TCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTT < 1:3604304/91‑1 TCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTT < 1:3283583/91‑1 TCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTT < 1:1494226/91‑1 TCCAACTGCTTTTTATTATGCTTCAAAGTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGA < 2:2620195/91‑1 A‑AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTAAAAAAAAAAAAAAAAAGCAGTTGGACAATGGCGATT < 2:2729779/91‑1 AAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTG > 1:2473640/1‑91 AATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGA > 1:3436987/1‑42 AATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGA < 2:3436987/42‑1 ATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTA < 2:2560684/91‑1 TCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGaac < 2:2858146/91‑4 TCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAA > 2:2209960/1‑91 TCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAA > 1:2551895/1‑91 CGGACACATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAA > 1:3018478/1‑91 CGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAA < 1:1358974/91‑1 GGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA > 2:902747/1‑91 GGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA > 2:3666537/1‑91 GGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA > 1:842304/1‑91 GGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA > 1:2839760/1‑91 GGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA > 1:1829989/1‑91 GGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA > 1:1348944/1‑91 TAGTCAATCAAGTTAATCAGAAAAGCAGTCGAACAATGATTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAA‑AAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2252569‑2252663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcgGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTTTTGACTTTGAAGCATAATAAAAAGCAGTTGGACAATGGCGATTGTAAAA < USA300TCH1516_ALE/2252697‑2252608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |