BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2252663	137 (0.720)	13 (0.070)	7/148	NT	8.4%	intergenic (+99/+53)	luxS/USA300HOU_RS11525	S‑ribosylhomocysteine lyase/hypothetical protein
*	?	USA300TCH1516_ALE	= 2252697	158 (0.900)	13 (0.070)	7/148	NT	8.4%	intergenic (+133/+19)	luxS/USA300HOU_RS11525	S‑ribosylhomocysteine lyase/hypothetical protein

Only 100 of 245 total aligned reads displayed.

TTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAA  >  USA300TCH1516_ALE/2252608‑2252787

ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTct                                                                                           >  2:3860653/1‑90 (MQ=255)

ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                                                                           >  1:2839760‑M2/1‑90 (MQ=255)

ttttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCc                                                                                           >  1:842304‑M2/1‑90 (MQ=255)

 tttACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcg                                                                                          <  1:1358974‑M2/91‑3 (MQ=255)

  gttcaatCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcga                                                                                         <  2:2858146‑M2/88‑4 (MQ=255)

   tACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgat                                                                                        <  2:2560684‑M2/91‑5 (MQ=255)

     cAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattt                                                                                      >  1:2473640‑M2/1‑85 (MQ=255)

      aaTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGattta                                                                                     >  1:121798/1‑91 (MQ=255)

      aaTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGattta                                                                                     <  2:3479578/91‑1 (MQ=255)

      aaTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGattta                                                                                     >  2:3248058/1‑91 (MQ=255)

        tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttatt                                                                                   >  1:1000446/1‑91 (MQ=255)

        tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttatt                                                                                   <  1:575098/91‑1 (MQ=255)

               tGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAc                                                                            >  1:814618/1‑91 (MQ=255)

               tGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAc                                                                            >  1:3760107/1‑91 (MQ=255)

               tGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAc                                                                            <  1:1941536/91‑1 (MQ=255)

                gTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAcc                                                                           >  2:3554198/1‑91 (MQ=255)

                gTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAAcc                                                                           <  1:704331/91‑1 (MQ=255)

                 tCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCa                                                                          <  1:610812/91‑1 (MQ=255)

                 tCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCa                                                                          <  1:1040902/91‑1 (MQ=255)

                  ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                         <  2:2083756/91‑1 (MQ=255)

                  ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                         <  1:1157184/91‑1 (MQ=255)

                  ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                         <  2:1214911/91‑1 (MQ=255)

                   cAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACt                                                                        <  2:3799154/91‑1 (MQ=255)

                    aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                       <  2:2749272/91‑1 (MQ=255)

                    aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                       >  2:2038445/1‑91 (MQ=255)

                    aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                       <  2:1988452/91‑1 (MQ=255)

                    aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                       >  1:1721124/1‑91 (MQ=255)

                     actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACtat                                                                      <  1:2625390‑M2/82‑1 (MQ=255)

                     actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACtat                                                                      <  1:912354‑M2/82‑1 (MQ=255)

                      ctgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACtata                                                                     <  1:307643‑M2/83‑1 (MQ=255)

                       tgcttttTATTATGCTTCAAAGTCACAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATaa                                                                    <  1:3627807‑M2/84‑1 (MQ=255)

                         cttttTATTATGCTTCAAAGTCAAAAAATCAAAAAAAAAAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAtt                                                                  <  2:2683922‑M2/86‑1 (MQ=255)

                         cttttTATTATGCTTCAAAGTCAAAAAAGCGAAAAAAAAAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAtt                                                                  <  2:3622163‑M2/86‑1 (MQ=255)

                          ttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAttt                                                                 <  1:23660‑M2/87‑1 (MQ=255)

                          ttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAttt                                                                 <  2:1597537‑M2/87‑1 (MQ=255)

                          ttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAttt                                                                 >  1:3407052‑M2/5‑91 (MQ=255)

                           tttTATTATGCTTCAAAGTCAAAAAATCGAACAAATTAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCActataaaatt                                                                <  2:3058766‑M2/88‑5 (MQ=255)

                           tttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTc                                                                <  2:617993‑M2/88‑1 (MQ=255)

                            ttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCt                                                               <  1:1327333‑M2/89‑1 (MQ=255)

                            ttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCt                                                               <  2:1648969‑M2/89‑1 (MQ=255)

                            ttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCt                                                               <  1:137796‑M2/89‑1 (MQ=255)

                             tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt                                                              >  1:2960565‑M2/2‑91 (MQ=255)

                             tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt                                                              <  1:3017503‑M2/90‑1 (MQ=255)

                               attatGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTaa                                                            >  2:501689/1‑91 (MQ=255)

                                ttatGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAAt                                                           <  2:676873/91‑1 (MQ=255)

                                   tGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAg                                                        <  1:1053404/91‑1 (MQ=255)

                                    gCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGt                                                       >  2:905689/1‑91 (MQ=255)

                                    gCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGt                                                       <  1:1143810/91‑1 (MQ=255)

                                          aaGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCAtt                                                 <  2:412828/91‑1 (MQ=255)

                                            gTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTccc                                                    <  1:3812901/86‑1 (MQ=255)

                                             tCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAac                                              <  1:3147804/91‑1 (MQ=255)

                                              cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                             <  1:3196161/91‑1 (MQ=255)

                                              cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                             <  2:1086744/91‑1 (MQ=255)

                                              cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                             <  1:3192514/91‑1 (MQ=255)

                                              cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                             <  2:2252716/91‑1 (MQ=255)

                                              cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                             >  2:213477/1‑91 (MQ=255)

                                               aaaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattttttgactttgaagcataataaaaagcagttggacaatggcga                                            <  1:3283583‑M2/91‑49 (MQ=255)

                                               aaaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattttttgactttgaagcataataaaaagcagttggacaatggcga                                            <  1:1494226‑M2/91‑49 (MQ=255)

                                               aaaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAacac                                            <  2:3681189/91‑1 (MQ=255)

                                                 aaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACGCGa                                          >  1:3010106/1‑91 (MQ=255)

                                                  aaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGaa                                         >  2:396724/1‑91 (MQ=255)

                                                   aaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattttttgactttgaagcataataaaaagcagttggacaatggcgattgt                                        <  1:3502146‑M2/91‑53 (MQ=255)

                                                   aaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattttttgactttgaagcataataaaaagcagttggacaatggcgattgt                                        <  2:1953469‑M2/91‑53 (MQ=255)

                                                   aaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAAc                                        <  1:461661/91‑1 (MQ=255)

                                                   aaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAAc                                        >  2:1786866/1‑91 (MQ=255)

                                                    aTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattttttaactttgaagcataataaaaagcagttggacaatggcgattgta                                       <  1:3865864‑M2/91‑54 (MQ=255)

                                                     tCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCcgattttttgactttgaagcataataaaaagcagttggacaatggcgattgtaa                                      <  2:900384‑M2/91‑55 (MQ=255)

                                                     tCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCAt                                                  <  2:852290/79‑1 (MQ=255)

                                                     tCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTg                                      >  2:3007300/1‑91 (MQ=255)

                                                     tCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTg                                      >  2:590017/1‑91 (MQ=255)

                                                      cGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGc                                     <  2:188586/91‑1 (MQ=255)

                                                         aCAAATGAAAAAGTAATATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATa                                  >  2:2507351/1‑91 (MQ=255)

                                                         aCAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACCCGAACTGCATa                                  >  2:2962911/1‑91 (MQ=255)

                                                           aaaTGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATGAGTCCCATTAACACGAACTGCATAgg                                >  2:3085193/1‑91 (MQ=255)

                                                              tGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTaa                             >  2:940492/1‑91 (MQ=255)

                                                               gAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAAc                            <  1:3689555/91‑1 (MQ=255)

                                                                 aaaaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCt                          >  2:2067678/1‑91 (MQ=255)

                                                                 aaaaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATGTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCt                          <  2:3185786/91‑1 (MQ=255)

                                                                 aaaaGTAAAATCTTTAACATTTGTCCGATTTATTTGACAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCt                          >  2:2365805/1‑91 (MQ=255)

                                                                   aaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTa                        <  1:3371607/91‑1 (MQ=255)

                                                                    aGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTaa                       >  1:2564871/1‑91 (MQ=255)

                                                                    aGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAAATAGTCCCATTAACACGAACTGCATAGGTAACCTTaa                       >  2:3834905/1‑91 (MQ=255)

                                                                      tAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAat                     <  2:1811861/91‑1 (MQ=255)

                                                                      tAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAat                     <  2:2804606/91‑1 (MQ=255)

                                                                      tAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAat                     <  2:3491201/91‑1 (MQ=255)

                                                                       aaaaTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAata                    <  1:1865264/91‑1 (MQ=255)

                                                                        aaaTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAatat                   <  2:1118494/91‑1 (MQ=255)

                                                                          aTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAg                 <  2:1969405/91‑1 (MQ=255)

                                                                          aTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAg                 <  2:3391324/91‑1 (MQ=255)

                                                                          aTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAg                 >  1:1879576/1‑91 (MQ=255)

                                                                           tCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGt                <  1:2184584/91‑1 (MQ=255)

                                                                            cTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGtt               >  1:1772990/1‑91 (MQ=255)

                                                                            cTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGtt               >  1:1771607/1‑91 (MQ=255)

                                                                              ttAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGc             <  1:309089/91‑1 (MQ=255)

                                                                                aaCATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCa           <  1:965974/91‑1 (MQ=255)

                                                                                     ttGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTg      <  2:1850789/91‑1 (MQ=255)

                                                                                       gTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGc    <  1:1591159/91‑1 (MQ=255)

                                                                                        tCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCa   <  2:3433036/91‑1 (MQ=255)

                                                                                        tCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCa   <  2:3432853/91‑1 (MQ=255)

                                                                                         ccGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCaa  <  1:2134021/91‑1 (MQ=255)

TTTTACAATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAA  >  USA300TCH1516_ALE/2252608‑2252787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.