| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2259599 | 156 (0.820) | 19 (0.110) | 9/142 | NT | 11.3% | intergenic (‑244/+428) | USA300HOU_RS11560/USA300HOU_RS11565 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2259613 | 159 (0.940) | intergenic (‑258/+414) | USA300HOU_RS11560/USA300HOU_RS11565 | hypothetical protein/hypothetical protein | |||||
GCCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2259501‑2259599‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacagttgCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGTCTG < USA300TCH1516_ALE/2259613‑2259524 GCCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAA < 1:156904/91‑1GCCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAA > 1:2305273/1‑91GCCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAA > 2:156904/1‑91GCCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAA > 1:851458/1‑91 CCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAAT < 2:2362542/91‑1 CCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAAT < 1:374766/91‑1 CCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAAT < 2:3699665/91‑1 CCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAAT < 2:167647/91‑1 CCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAAT < 1:2487992/91‑1 CAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATAC < 1:3159089/91‑1 CAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATAC < 1:1484865/91‑1 CAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATAC > 2:2359000/1‑91 GGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAG > 2:3225987/1‑91 GGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAG > 1:1960125/1‑91 GACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGT < 2:3386233/91‑1 GACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGT < 1:3842683/91‑1 GACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGT < 2:2194350/91‑1 GACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGT > 2:3540655/1‑91 ACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTATGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTT > 1:3362675/1‑91 ACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTT > 2:837608/1‑91 CATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTG < 2:684988/91‑1 CATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACAATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTG < 2:1002636/91‑1 CATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACAATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTG < 2:1003740/91‑1 TTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTA < 1:2857059/91‑1 TTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTA < 1:1269676/91‑1 CGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTG > 2:328701/1‑91 CAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCC < 2:3491617/91‑1 CAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCC < 2:3490984/91‑1 ACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAAC < 2:474924/91‑1 ACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAAC < 1:2380128/91‑1 ACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAAC < 2:474923/91‑1 CCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTG < 1:3324118/91‑1 CCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTG < 2:361863/91‑1 CCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTG < 1:2646206/91‑1 TTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTA < 1:2465994/91‑1 TTATCGTTTTCACTTCTAAGTAAGTCGAACTATGTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTA < 1:3174568/91‑1 CGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTGCAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTATTTA < 2:1903800/91‑1 CGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTATTTA < 1:328701/91‑1 CGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTATTTA < 2:64207/91‑1 GTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTATTTAG < 1:3662024/91‑1 GTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTATTTAG < 1:3662008/91‑1 TTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAG < 1:2115514/91‑1 ATACAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATA > 1:796037/1‑91 ATACAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATA < 2:2522038/91‑1 ATACAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATA < 2:2132289/91‑1 TACAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAA < 2:1554496/91‑1 CAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGG > 2:120736/1‑91 CAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGG > 1:3577136/1‑91 CAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGG > 1:2492633/1‑91 CAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGG > 1:2372574/1‑91 CAGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGG > 1:178185/1‑91 AGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGG > 1:674384/1‑91 AGTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACCTACTTAGAAGTGAAAACGATAAGGG > 1:3601561/1‑91 GTTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGT > 2:504046/1‑91 TTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGTa > 1:1457505/1‑90 TTGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGTC > 2:549951/1‑91 TGCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGTCT < 1:26741/91‑1 GCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGTCTG > 1:2347007/1‑91 GCCCAGGACATTAATTTACGTCCCAGACCCTTATCGTTTTCACTTCTAAGTAAGTCGAACTATTTTGCTTTACAACAAGTGCGACTCTAAATACAGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2259501‑2259599‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacagttgCTCGTATGTGTGTCCAACTGTATTTAGAGTCGCACTTGTTGTAAAGCAAAATAGTTCGACTTACTTAGAAGTGAAAACGATAAGGGTCTG < USA300TCH1516_ALE/2259613‑2259524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |