| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2421921 = | 155 (0.810) | 16 (0.090) | 9/146 | NT | 10.1% | intergenic (+37/+55) | USA300HOU_RS12475/hpxO | Putative 2‑hydroxyacid dehydrogenase/FAD‑dependent urate hydroxylase |
| ? | USA300TCH1516_ALE | 2421962 = | 145 (0.840) | intergenic (+78/+14) | USA300HOU_RS12475/hpxO | Putative 2‑hydroxyacid dehydrogenase/FAD‑dependent urate hydroxylase | |||||
GCTGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2422017‑2421921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggttTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACGA > USA300TCH1516_ALE/2421962‑2422051 GCTGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATG < 2:2386207/91‑1GCTGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATG > 1:2540980/1‑91GCTGGACAAACTAAATTCTTATATAAAACGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATG < 1:2478087/91‑1 CTGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGG > 2:2640822/1‑91 CTGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGG < 2:1849762/91‑1 TGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGG < 2:2718497/91‑1 TGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGG > 2:681455/1‑91 TGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGG > 1:2275542/1‑91 GGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGG < 1:1100920/91‑1 GGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGG > 1:1262957/1‑91 GGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGG > 1:1263154/1‑91 GACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGG < 2:2914086/91‑1 GACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGG < 2:2913954/91‑1 GACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGG < 2:2916730/91‑1 GACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGG < 1:695681/91‑1 GACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGG < 2:331251/91‑1 ACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGT < 2:2614897/91‑1 CAAACTAAGTTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATTTTGAATCGAGAGCTCAACATATGGGGGTT < 2:3382249/91‑1 CAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAGACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT < 2:3196035/91‑1 CAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT > 1:2346314/1‑91 CAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT > 2:3161863/1‑91 CAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT < 2:3088904/91‑1 CAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT > 1:2512593/1‑91 TAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGAGTTA > 1:3124812/1‑91 ATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAATAATTTA > 2:454063/1‑91 AAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTTCTCATAGTGTTGTATTATTATTCTTTCGATTTATATAAGAATTTAGTT > 2:1452411/1‑91 CCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTC > 2:282220/1‑91 CCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCC > 1:2552876/1‑91 CCGTATGTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAG > 1:3728598/1‑91 CGTATGTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGC > 2:1244600/1‑91 GTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTA > 2:1126785/1‑91 GTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTA > 2:68796/1‑91 GTTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTA > 1:462331/1‑91 GTTGAAACGAGAGCTCAACATACGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATACGAATTTAGTTTGTCCAGCTGCTA > 2:2970020/1‑91 TTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAA > 2:3111352/1‑91 TTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAA > 2:2600402/1‑91 TTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAA > 1:1305064/1‑91 TTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAA > 2:1486725/1‑91 TTGAAACGAGAGCTCAACATATGGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAA > 2:1087106/1‑91 GGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATA < 2:2384326/91‑1 GGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATA < 1:346222/91‑1 GGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATA > 2:1516794/1‑91 GGGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATA < 2:2859901/91‑1 GGGGTTTTCATATTGTTGTATTATTTTTTTTTTTTTTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAA > 2:2013646/1‑91 GGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAA > 2:83496/1‑91 GGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAA < 2:2311419/91‑1 GGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAA > 1:853911/1‑91 GGGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAA < 1:3801193/91‑1 GGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAAT < 2:3553998/91‑1 GGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAAT < 1:1227891/91‑1 GGGTTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAAT < 1:1227776/91‑1 GGTTTTCATATAGATGTATTATGTTTCTTTCGTTTTATGTAAGAAGTTAGTTTGTACAGATGCTAATGCATTTGGCATCATTTTCATAATA > 2:1880044/1‑91 GTTTTCATATTGTTGTATTATTTTACTTTCGATTTATATAAGAATTTAGTGTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATAC < 2:3601085/91‑1 TTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACG > 1:2485947/1‑91 TTTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACG > 1:1959030/1‑91 TTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACGA < 2:1959030/91‑1 TTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACGA < 1:39866/91‑1 TTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACGA > 1:2693034/1‑91 TTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACGA > 1:2169266/1‑91 GCTGGACAAACTAAATTCTTATATAAATCGAAAGAAAAATAATACAACAATATGAAAACCCCCGTATGTTGAAACGAGAGCTCAACATATGGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2422017‑2421921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggttTTCATATTGTTGTATTATTTTTCTTTCGATTTATATAAGAATTTAGTTTGTCCAGCTGCTAATGCATTTGGCATCATTTTCATAATACGA > USA300TCH1516_ALE/2421962‑2422051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |