| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2422230 = | 212 (1.110) | 8 (0.050) | 7/148 | NT | 4.1% | coding (871/1125 nt) | hpxO | FAD‑dependent urate hydroxylase |
| ? | USA300TCH1516_ALE | 2422269 = | 174 (0.990) | coding (832/1125 nt) | hpxO | FAD‑dependent urate hydroxylase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2422325‑2422230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTCACTT > USA300TCH1516_ALE/2422269‑2422357 ATGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGG > 1:1260744/1‑91ATGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGG > 1:1356895/1‑91ATGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGG < 1:1531699/91‑1ATGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGG < 1:1531713/91‑1 aGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGT < 1:3243993/90‑1 TGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGT > 1:3590933/1‑91 TGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGT > 1:3310437/1‑91 GATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTG < 1:726317/91‑1 GATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTG > 2:2482664/1‑91 GATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTG < 1:3405590/91‑1 ATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTGC > 2:2174804/1‑91 TTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTGCT > 1:1179254/1‑91 TTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTGCTG < 2:2233301/91‑1 CAGCACATGCGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAA > 2:2676678/1‑91 CACATGCGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATC > 2:738595/1‑91 ACATGCGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCA > 1:2716776/1‑91 ACATGCGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCA > 1:785889/1‑91 CATGCGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCAT > 1:3838822/1‑91 GCGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAA > 1:3371508/1‑91 CGACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAAT > 2:3498346/1‑91 GACAACGCCTAATATGGGGCAAGGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATA > 2:955236/1‑91 GTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTC < 1:95216/91‑1 GTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTC < 1:95206/91‑1 GTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTC < 2:2712729/91‑1 GTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTC < 1:95066/91‑1 GTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTC < 1:1867803/91‑1 GCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTCAC > 1:1475787/1‑91 CTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGA < 2:1669649/78‑1 CTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGA > 1:1669649/1‑78 TGCATCTCCTAGTAAAATAGTACGACCATAAGCAAAAGATTTGAGTGGTTTCAAATCATAGATATTATGCAATAATATACCTGTTTCACTT < 2:1144694/91‑1 ATGATTTGAAACCACTCAAATCTTTTGTTTATGGTCGTACTATTTTACTAGGAGATGCAGCACATGCGACAACGCCTAATATGGGGCAAGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2422325‑2422230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTCACTT > USA300TCH1516_ALE/2422269‑2422357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |