BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2422230 =	212 (1.110)	8 (0.050)	7/148	NT	4.1%	coding (871/1125 nt)	hpxO	FAD‑dependent urate hydroxylase
*	?	USA300TCH1516_ALE	2422269 =	174 (0.990)	8 (0.050)	7/148	NT	4.1%	coding (832/1125 nt)	hpxO	FAD‑dependent urate hydroxylase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 232 total aligned reads displayed.

CGTATGCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTCACTTTGT  >  USA300TCH1516_ALE/2422179‑2422360

cGTATGCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGtgctgc                                                                                             <  2:2152470/91‑1 (MQ=255)

 gTATGCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCa                                                                                            >  1:2634911/1‑91 (MQ=255)

  tATGTGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCAt                                                                                           >  2:47317/1‑91 (MQ=255)

    tGCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCAtct                                                                                         >  1:1788503/1‑91 (MQ=255)

     gCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCAtctc                                                                                        >  1:1618331/1‑91 (MQ=255)

     gCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCAtctc                                                                                        <  1:1715980/91‑1 (MQ=255)

     gCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCAtctc                                                                                        >  1:2930115/1‑91 (MQ=255)

       gTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCt                                                                                      <  1:2574520/91‑1 (MQ=255)

         tAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAg                                                                                    <  1:379122/91‑1 (MQ=255)

          aaaaCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGt                                                                                   >  2:1545665/1‑91 (MQ=255)

          aaaaCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGt                                                                                   >  1:2744276/1‑91 (MQ=255)

           aaaCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTa                                                                                  <  2:1234293/91‑1 (MQ=255)

            aaCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTaa                                                                                 >  1:2071981/1‑91 (MQ=255)

            aaCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTaa                                                                                 <  1:2903294/91‑1 (MQ=255)

            aaCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTaa                                                                                 >  2:2799205/1‑91 (MQ=255)

             aCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTaaa                                                                                <  1:1006462/91‑1 (MQ=255)

             aCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTaaa                                                                                <  1:1712936/91‑1 (MQ=255)

             aCAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTaaa                                                                                <  2:3670919/91‑1 (MQ=255)

                aTTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTTCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATa                                                                             <  2:3477465/91‑1 (MQ=255)

                aTTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATa                                                                             >  1:3301124/1‑91 (MQ=255)

                 tttACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAg                                                                            <  2:113933/91‑1 (MQ=255)

                  ttACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGt                                                                           >  2:313067/1‑91 (MQ=255)

                  ttACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGt                                                                           <  2:352864/91‑1 (MQ=255)

                    aCTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGTTGCATCTCCTAGTAAAATAGTAc                                                                         <  1:1602559/91‑1 (MQ=255)

                    aCTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTAc                                                                         >  2:3278985/1‑91 (MQ=255)

                    aCTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTAc                                                                         <  2:2478087/91‑1 (MQ=255)

                     cTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTa                                                                          >  2:1624704/1‑89 (MQ=255)

                     cTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACg                                                                        >  2:2079703/1‑91 (MQ=255)

                     cTAATACGATAGCATCTTCCATTCCTTGTCCAGCACCTTGCCCCATCTTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACg                                                                        >  1:3076252/1‑91 (MQ=255)

                      tAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGa                                                                       >  1:3564822/1‑91 (MQ=255)

                      tAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGa                                                                       >  1:3562635/1‑91 (MQ=255)

                          aCGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCAt                                                                   >  1:370347/1‑91 (MQ=255)

                            gATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATaa                                                                 <  1:2445053/91‑1 (MQ=255)

                              tAGTATCTTTCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAAc                                                               <  1:3489639/91‑1 (MQ=255)

                              tAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAAc                                                               >  2:2145423/1‑91 (MQ=255)

                              tAGCATCTTCCATTGCTTGTCCAGCACCTGGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAAc                                                               <  2:2688196/91‑1 (MQ=255)

                                gCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACaa                                                             <  2:2814802/91‑1 (MQ=255)

                                gCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACaa                                                             <  1:2145423/91‑1 (MQ=255)

                                gCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACaa                                                             <  1:1975063/91‑1 (MQ=255)

                                gCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACaa                                                             <  1:2255645/91‑1 (MQ=255)

                                 cATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACaaa                                                            >  1:1383377/1‑91 (MQ=255)

                                   tCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAg                                                          >  2:716219/1‑91 (MQ=255)

                                   tCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAg                                                          >  2:2745509/1‑91 (MQ=255)

                                     ttCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGAt                                                        >  2:1378812/1‑91 (MQ=255)

                                     ttCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGAt                                                        >  2:1726956/1‑91 (MQ=255)

                                       ccATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGAttt                                                      >  1:484705/1‑91 (MQ=255)

                                        cATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTg                                                     <  1:2165143/91‑1 (MQ=255)

                                         aTTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACaa                                                             >  2:2432455/1‑82 (MQ=255)

                                          ttGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAg                                                   >  2:1867803/1‑91 (MQ=255)

                                          ttGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAg                                                   >  1:2664274/1‑91 (MQ=255)

                                            gCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTg                                                 >  2:1448921/1‑91 (MQ=255)

                                              ttGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGt                                               <  1:2527409/91‑1 (MQ=255)

                                              ttGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGt                                               >  2:877705/1‑91 (MQ=255)

                                              ttGTCCAGCACCTTGCCCCATATTAGGCGTTGTCACATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGt                                               >  2:2636326/1‑91 (MQ=255)

                                               tGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGtt                                              <  2:2596432/91‑1 (MQ=255)

                                                 tCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGCGTGGTTTc                                            >  2:1888576/1‑91 (MQ=255)

                                                  ccAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTTCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCa                                           >  2:58852/1‑91 (MQ=255)

                                                    AGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCaaa                                         >  1:1179254‑M1/1‑91 (MQ=255)

                                                      cacatgcgacaacgcctaatatggggcaaggtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATc                                       >  2:738595‑M2/37‑91 (MQ=255)

                                                      CACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATc                                       <  1:3405590‑M1/91‑1 (MQ=255)

                                                       acatgcgacaacgcctaatatggggcaaggtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCa                                      >  1:785889‑M2/36‑91 (MQ=255)

                                                       ACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCa                                      >  1:3590933‑M1/1‑91 (MQ=255)

                                                       ACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCa                                      >  1:3310437‑M1/1‑91 (MQ=255)

                                                        CCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCAt                                     >  1:1260744‑M1/1‑91 (MQ=255)

                                                        CCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCAt                                     <  1:1531713‑M1/91‑1 (MQ=255)

                                                         cTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCACATCATa                                    <  1:3013474/91‑1 (MQ=255)

                                                         cTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATa                                    <  1:1904700/91‑1 (MQ=255)

                                                          ttGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATaa                                   >  1:624873/1‑91 (MQ=255)

                                                          ttGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATaa                                   <  2:2582196/91‑1 (MQ=255)

                                                           tGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATaaa                                  <  1:2461165/91‑1 (MQ=255)

                                                           tGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATaaa                                  >  2:2512990/1‑91 (MQ=255)

                                                            gCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAat                                 >  1:626375/1‑91 (MQ=255)

                                                            gCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAat                                 >  1:3800578/1‑91 (MQ=255)

                                                            gCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAat                                 <  1:3260055/91‑1 (MQ=255)

                                                             gacaacgcctaatatggggcaaggtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAata                                >  2:955236‑M2/30‑91 (MQ=255)

                                                                  tatTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATg                           >  1:2736615/1‑91 (MQ=255)

                                                                  tatTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATg                           >  2:1065773/1‑91 (MQ=255)

                                                                   atTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGc                          <  1:346383/91‑1 (MQ=255)

                                                                    ttAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCa                         <  1:83496/91‑1 (MQ=255)

                                                                    ttAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCa                         <  1:2013646/91‑1 (MQ=255)

                                                                       ggCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATa                      >  2:638830/1‑91 (MQ=255)

                                                                       ggCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATa                      >  2:3771147/1‑91 (MQ=255)

                                                                         cGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAg                    >  2:2341803/1‑91 (MQ=255)

                                                                         cGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAg                    >  2:3540176/1‑91 (MQ=255)

                                                                         cGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAg                    <  2:2447181/91‑1 (MQ=255)

                                                                           ttGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGAt                  <  2:2898438/91‑1 (MQ=255)

                                                                            tGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATa                 >  2:904263/1‑91 (MQ=255)

                                                                            tGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATa                 >  1:893869/1‑91 (MQ=255)

                                                                              tCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATAcc               <  1:293481/91‑1 (MQ=255)

                                                                               cGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGc                          <  2:2221787/79‑1 (MQ=255)

                                                                               cGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGc                          >  1:2221787/1‑79 (MQ=255)

                                                                               cGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCt              >  2:2292449/1‑91 (MQ=255)

                                                                                gCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTg             <  2:1695290/91‑1 (MQ=255)

                                                                                 cATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGt            <  2:1295846/91‑1 (MQ=255)

                                                                                  aTGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGtt           >  2:1857800/1‑91 (MQ=255)

                                                                                  aTGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGtt           <  2:2664274/91‑1 (MQ=255)

                                                                                    gtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTc         <  1:1867803‑M2/85‑1 (MQ=255)

                                                                                    gtgctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTc         <  1:95206‑M2/85‑1 (MQ=255)

                                                                                       ctgCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGa                   <  2:1669649‑M2/75‑1 (MQ=255)

                                                                                        tgCATCTCCTAGTAAAATAGTACGACCATAAGCAAAAGATTTGAGTGGTTTCAAATCATAGATATTATGCAATAATATACCTGTTTCACtt     <  2:1144694‑M2/89‑1 (MQ=255)

CGTATGCGTTAAAACAATTTACTAATACGATAGCATCTTCCATTGCTTGTCCAGCACCTTGCCCCATATTAGGCGTTGTCGCATGTGCTGCATCTCCTAGTAAAATAGTACGACCATAAACAAAAGATTTGAGTGGTTTCAAATCATAAATATTATGCAATAAGATACCTGTTTCACTTTGT  >  USA300TCH1516_ALE/2422179‑2422360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.