| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2493152 = | 220 (1.150) | 11 (0.060) | 6/146 | NT | 5.5% | coding (823/1035 nt) | USA300HOU_RS12835 | Ferredoxin‑‑NADP reductase |
| ? | USA300TCH1516_ALE | 2493184 = | 176 (1.010) | coding (791/1035 nt) | USA300HOU_RS12835 | Ferredoxin‑‑NADP reductase | |||||
CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2493248‑2493152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgacaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTA > USA300TCH1516_ALE/2493184‑2493273 CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATA > 2:3618954/1‑91CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATA < 2:1425278/91‑1CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATA > 2:2622994/1‑91CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATA > 2:2360766/1‑91CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATA < 2:1105893/91‑1CATGGGTTTGAGCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATA < 2:1106360/91‑1 ATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATAC > 1:1569238/1‑91 ATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATAC < 1:221348/91‑1 TGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACG < 2:1523331/91‑1 TGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACG < 2:1523297/91‑1 TGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACG < 2:1523282/91‑1 TGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACG < 2:1522725/91‑1 TGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACG < 2:1524867/91‑1 GGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGA > 1:3770310/1‑91 GGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGAC > 2:1676619/1‑91 GGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGAC < 1:2185942/91‑1 TTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGACAA < 2:2658692/91‑1 TTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGACAA > 1:1681949/1‑91 ATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGAC < 1:3729670/69‑1 ATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGAC > 2:3729670/1‑69 TTGTCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAA > 1:2585048/1‑91 TGTCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAAC > 1:734479/1‑91 GTCGTGTTAAAGGATTTGGTATTACGACAGTCATCATGCATATCTAGCTTTGAAGATGTTTCAATCAATAATGATTTACAACGATCAAACt > 2:1154261/1‑90 GTCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACC > 2:1056549/1‑91 GTCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACC > 2:1299479/1‑91 TCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCC > 1:1487100/1‑91 TCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCC > 2:3293850/1‑91 TCGTGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCC > 1:2119213/1‑91 TGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATG > 1:548027/1‑91 TGTTAAAGGATTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATG > 1:548368/1‑91 TTTGGTAATACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATG > 2:2466556/1‑91 ACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCA < 2:195714/91‑1 ACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCA < 2:2710896/91‑1 ACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCA > 1:1420900/1‑91 CGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAA > 2:629629/1‑91 ACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAAT > 2:3804953/1‑91 ACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACCATCAAACCCATGACTAATAATGACATCGTCAAAc > 2:992577/1‑90 CAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATT > 2:3309487/1‑91 CAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATT > 2:788301/1‑91 CAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATT < 2:941088/91‑1 CAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATT < 2:941248/91‑1 AATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTT > 1:1738496/1‑91 ATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTA < 1:3267497/91‑1 ATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTA > 1:365032/1‑91 ATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACCATCAAACCCATGACTAATAATGACATCGTCAAATTTA < 1:3267536/91‑1 CATGGGTTTGATCGTTGTAATACATTATTGAGTGAAACATCTTCAAAGCTAGATATGCATGATGATTGTCGTGTTAAAGGATTTGGTAATACGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2493248‑2493152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgacaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTA > USA300TCH1516_ALE/2493184‑2493273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |