| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2493152 = | 220 (1.150) | 11 (0.060) | 6/146 | NT | 5.5% | coding (823/1035 nt) | USA300HOU_RS12835 | Ferredoxin‑‑NADP reductase |
| ? | USA300TCH1516_ALE | 2493184 = | 176 (1.010) | coding (791/1035 nt) | USA300HOU_RS12835 | Ferredoxin‑‑NADP reductase | |||||
Only 100 of 273 total aligned reads displayed.
TTGCACCATCACTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAA > USA300TCH1516_ALE/2493062‑2493242 | taaatttgacgatgtcattattagtcatgggtttgatggttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgat < 1:3267536‑M1/1‑1 (MQ=255)taaatttgacgatgtcattattagtcatgggtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgat > 1:365032‑M1/91‑91 (MQ=255) gCACCATCACTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTg > 2:2505186/1‑91 (MQ=255) cACCATCACTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGt > 2:1418722/1‑91 (MQ=255) ttgacgatgtcattattagtcatgggtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgaTTGTCg > 2:629629‑M1/86‑91 (MQ=255) tgacgatgtcattattagtcatgggtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgaTTGTCGt < 2:2710896‑M1/7‑1 (MQ=255) tgacgatgtcattattagtcatgggtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgaTTGTCGt < 2:195714‑M1/7‑1 (MQ=255) cATCACTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGt > 1:3811538/1‑91 (MQ=255) cACTAAATGTACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTAtt > 1:1953631/1‑91 (MQ=255) cTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTAc > 2:987558/1‑91 (MQ=255) cTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTAc < 2:238231/91‑1 (MQ=255) aaTGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGt < 2:1274453/77‑1 (MQ=255) aaTGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCaa < 2:1093498/91‑1 (MQ=255) aTGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCaaa > 2:3330664/1‑91 (MQ=255) aTGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCaaa < 2:2657409/91‑1 (MQ=255) cACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATcc > 2:3476955/1‑91 (MQ=255) cTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATc > 1:2322465/1‑88 (MQ=255) cTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATc < 2:2322217/88‑1 (MQ=255) cTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCtt > 1:1676619/1‑91 (MQ=255) cTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCtt > 1:2451214/1‑91 (MQ=255) gCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTaa > 1:1635120/1‑91 (MQ=255) gCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTaa > 2:2420505/1‑91 (MQ=255) cAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAac < 1:1516222/91‑1 (MQ=255) cAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAac < 1:3860/91‑1 (MQ=255) catgggtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgaTTGTCGTATTACCAAATCCTTTAaca > 1:548027‑M1/66‑91 (MQ=255) aTTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAacac < 2:2451214/91‑1 (MQ=255) aTTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAacac > 1:222231/1‑91 (MQ=255) tAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGa < 1:2482324/91‑1 (MQ=255) tAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGa > 2:2690875/1‑91 (MQ=255) gggtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgaTTGTCGTATTACCAAATCCTTTAACACGa > 1:1487100‑M1/63‑91 (MQ=255) agtttgatcgttgtaaatcattattgattgaaacatcttcaaagctagatatgcatgatgaCTGTCGTAATACCAAATCCTTTAACACGAc > 2:1154261‑M1/62‑91 (MQ=255) aGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCaa < 2:2274207/76‑1 (MQ=255) aGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGAc < 2:1301163/91‑1 (MQ=255) aGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGAc < 2:246459/91‑1 (MQ=255) aGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCAGAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTATCACGAc < 2:2591430/91‑1 (MQ=255) gtttgatcgttgtaatacattattgagtgaaacatcttcaaagctagatatgcatgatgaTTGTCGTATTACCAAATCCTTTAACACGACa > 1:734479‑M1/61‑91 (MQ=255) gATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACa < 1:364349/91‑1 (MQ=255) tgtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAat > 1:3739802/1‑91 (MQ=255) tgtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAat > 1:620450/1‑91 (MQ=255) gtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAatc < 1:3413718/91‑1 (MQ=255) tttGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATcatcat > 1:1168129/1‑91 (MQ=255) tGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGc > 2:1600577/1‑91 (MQ=255) gCATCATGATAAACAATATCTCCACACGCATAGATACTAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCa > 1:1202801/1‑91 (MQ=255) gCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCa > 1:982634/1‑91 (MQ=255) catcatGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCat > 1:2595484/1‑91 (MQ=255) catcatGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCac < 2:50305/91‑2 (MQ=255) atcatGATAAAGAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCata < 1:3517357/91‑1 (MQ=255) tcatGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCatat < 1:3030321/91‑1 (MQ=255) catGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATc > 2:527268/1‑91 (MQ=255) catGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATc < 1:2947506/91‑1 (MQ=255) catGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATc > 2:1924403/1‑91 (MQ=255) atGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGTATATCt < 2:3545006/91‑1 (MQ=255) atGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCt < 2:2647701/91‑1 (MQ=255) tGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTa < 1:2402423/91‑1 (MQ=255) aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATGCTTTAACACGACAATCATCATGCATATCTAGc < 2:3805647/91‑1 (MQ=255) aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGc < 2:1674245/91‑1 (MQ=255) aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGc < 2:2057782/91‑1 (MQ=255) tAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCt < 1:1711112/91‑1 (MQ=255) aaaCAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCtt < 1:2066366/91‑1 (MQ=255) aCAATCTCTCCACACGCATAGATACTAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTg < 1:3610978/91‑1 (MQ=255) aaTATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGaa < 2:3133293/91‑1 (MQ=255) aaTATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGaa > 2:3772958/1‑91 (MQ=255) aaTATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGaa < 2:3630486/91‑1 (MQ=255) atatCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAg > 1:2884484/1‑91 (MQ=255) atCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt < 2:161493/91‑1 (MQ=255) atCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt > 2:762577/1‑91 (MQ=255) atCTCCACACGCACAGATACCAGGTATACTAGTTGTCGTATTAGCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt < 1:3880330/91‑1 (MQ=255) ctcCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGt < 1:2295601/91‑1 (MQ=255) ctcCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGt < 2:1573915/91‑1 (MQ=255) ccACACGCATAGATACCAGGTATACTAGTTGTCGTATTACGAAATCCATTAACACGACAATCATCACTCATATCTAGCTTTGAAGATGttt > 2:3602027/1‑91 (MQ=255) ccACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGttt > 1:3217410/1‑91 (MQ=255) ccACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGttt > 1:1088562/1‑91 (MQ=255) cacaCGCATAGATACCAGGTATACTAGTTGTTGTATTACCAAATCCTTTAACACg < 2:2806944/55‑1 (MQ=255) cacaCGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTc > 1:2167516/1‑91 (MQ=255) cacaCGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTc > 1:1818816/1‑91 (MQ=255) acacGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCa < 2:809803/91‑1 (MQ=255) acGCATAGTTACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCTTGCATATCTAGCTTTGAAGATGTTTCACt < 2:3372086/91‑1 (MQ=255) acGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACt > 2:2543915/1‑91 (MQ=255) gCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCa < 2:1223434/91‑1 (MQ=255) aGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaataa < 2:570271/91‑1 (MQ=255) aGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaataa > 1:965924/1‑91 (MQ=255) gATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaataat < 2:144869/91‑1 (MQ=255) ccAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTAt < 1:1341788/91‑1 (MQ=255) ccAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTAt > 2:2929767/1‑91 (MQ=255) cAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTAtt < 1:2381084/91‑1 (MQ=255) cAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTAtt < 2:3308837/91‑1 (MQ=255) ggTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTAc < 2:3270900/91‑1 (MQ=255) gTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACa > 2:197238/1‑91 (MQ=255) gTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACa > 2:1726994/1‑91 (MQ=255) gTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACa > 2:430720/1‑91 (MQ=255) tataCTAGTTGTCGTATTACCAAATCCTTTAAAACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACaa < 2:997066/91‑1 (MQ=255) ataCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCttt > 1:2120844/1‑60 (MQ=255) ataCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCttt < 2:2120844/60‑1 (MQ=255) taCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACg < 1:243227/91‑1 (MQ=255) taCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACg < 2:852054/91‑1 (MQ=255) aCTAGTTGTCGTATTACCAAATCCTTTAACATGACAATCATCATGCATATCTAGCTTTGAAGATGTTGCACTCAATAATCTATTACAACGa > 2:2962753/1‑91 (MQ=255) cTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGAt > 1:843485/1‑91 (MQ=255) tAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATc > 1:131879/1‑91 (MQ=255) tAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATc > 1:931592/1‑91 (MQ=255) gTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCaa > 1:1322804/1‑91 (MQ=255) | TTGCACCATCACTAAATGCACTTGCAATTAGATGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAA > USA300TCH1516_ALE/2493062‑2493242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |