BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2493152 =	220 (1.150)	11 (0.060)	6/146	NT	5.5%	coding (823/1035 nt)	USA300HOU_RS12835	Ferredoxin‑‑NADP reductase
*	?	USA300TCH1516_ALE	2493184 =	176 (1.010)	11 (0.060)	6/146	NT	5.5%	coding (791/1035 nt)	USA300HOU_RS12835	Ferredoxin‑‑NADP reductase

Only 100 of 261 total aligned reads displayed.

TGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTAA  >  USA300TCH1516_ALE/2493094‑2493274

tgtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAat                                                                                            <  1:1979956/91‑1 (MQ=255)

tgtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAat                                                                                            <  1:2438040/91‑1 (MQ=255)

 gtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGCTACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAatc                                                                                           >  1:3363967/1‑91 (MQ=255)

 gtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAatc                                                                                           <  1:1204934/91‑1 (MQ=255)

 gtgATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAatc                                                                                           <  1:2838156/91‑1 (MQ=255)

     ttttGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAAtcatca                                                                                       <  1:3195956/91‑1 (MQ=255)

        tGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGc                                                                                    >  2:1600577/1‑91 (MQ=255)

         gCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAATACCTTTAACATGACAATCATCATGCa                                                                                   >  2:3366825/1‑91 (MQ=255)

         gCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCa                                                                                   >  1:734726/1‑91 (MQ=255)

         gCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCa                                                                                   >  1:1202339/1‑91 (MQ=255)

         gCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCa                                                                                   >  1:982634/1‑91 (MQ=255)

          catcatGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCac                                                                                  <  2:50305/91‑2 (MQ=255)

             catGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATc                                                                               >  2:527268/1‑91 (MQ=255)

             catGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATc                                                                               <  1:2947506/91‑1 (MQ=255)

             catGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATc                                                                               <  1:2394851/91‑1 (MQ=255)

              atGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGTATATCt                                                                              <  2:3544599/91‑1 (MQ=255)

              atGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCt                                                                              <  2:2647701/91‑1 (MQ=255)

                 aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGc                                                                           <  2:2058831/91‑1 (MQ=255)

                 aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGc                                                                           <  1:2420505/91‑1 (MQ=255)

                 aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGc                                                                           <  2:1674245/91‑1 (MQ=255)

                 aTAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGc                                                                           >  2:2696957/1‑91 (MQ=255)

                  tAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCt                                                                          >  2:2451396/1‑91 (MQ=255)

                   aaaCAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCtt                                                                         <  1:2066533/91‑1 (MQ=255)

                   aaaCAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCtt                                                                         >  1:3504688/1‑91 (MQ=255)

                     aCAATCTCTCCACACGCATAGATACTAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTg                                                                       <  1:3610978/91‑1 (MQ=255)

                      cAATATCTCCACACGCATAGATAGTAGGTATACTAGTTGTCGTATTACCATATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGa                                                                      <  2:3603500/91‑1 (MQ=255)

                       aaTATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGaa                                                                     <  2:2034411/91‑1 (MQ=255)

                       aaTATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGaa                                                                     <  2:3630486/91‑1 (MQ=255)

                         tatCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTagaaga                                                                   >  2:3583804/1‑91 (MQ=255)

                          atCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt                                                                  >  2:762577/1‑91 (MQ=255)

                          atCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt                                                                  >  1:3642203/1‑91 (MQ=255)

                          atCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt                                                                  >  1:1727583/1‑91 (MQ=255)

                          atCTCCACACGCAGAGATACCAGGTATACTAGTTGTCGTATTAGCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAt                                                                  <  1:3880551/91‑1 (MQ=255)

                            ctcCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGt                                                                <  2:1573964/91‑1 (MQ=255)

                            ctcCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGt                                                                >  2:1472274/1‑91 (MQ=255)

                            ctcCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGt                                                                <  2:1058987/91‑1 (MQ=255)

                            ctcCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGt                                                                <  1:2295601/91‑1 (MQ=255)

                              ccACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGttt                                                              >  1:1088562/1‑91 (MQ=255)

                              ccACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGttt                                                              >  1:3749017/1‑91 (MQ=255)

                                acacGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCa                                                            <  2:809803/91‑1 (MQ=255)

                                 cacGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCAc                                                           >  2:2751334/1‑91 (MQ=255)

                                  acGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACt                                                          >  2:2543915/1‑91 (MQ=255)

                                    gCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCa                                                        <  2:2880255/91‑1 (MQ=255)

                                    gCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCa                                                        <  2:1223434/91‑1 (MQ=255)

                                      aTAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaat                                                      <  1:1647589/91‑1 (MQ=255)

                                      aTAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaat                                                      >  2:1926095/1‑91 (MQ=255)

                                       tAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaata                                                     >  2:2654384/1‑91 (MQ=255)

                                        aGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaataa                                                    >  2:1683284/1‑91 (MQ=255)

                                        aGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCaataa                                                    >  1:965924/1‑91 (MQ=255)

                                         gATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACTATCATCATGCATATCTAGCTTTGAAGATGCTTCACTCaataat                                                   >  1:3874100/1‑91 (MQ=255)

                                              cAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTAtt                                              <  1:2381084/91‑1 (MQ=255)

                                              cAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTAtt                                              <  2:3308837/91‑1 (MQ=255)

                                                ggTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTAc                                            <  2:3270900/91‑1 (MQ=255)

                                                 gTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACa                                           >  2:430720/1‑91 (MQ=255)

                                                 gTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACa                                           >  2:196015/1‑91 (MQ=255)

                                                  tataCTAGTTGTCGTATTACCAAATCCTTTAAAACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACaa                                          <  2:997066/91‑1 (MQ=255)

                                                   ataCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCttt                                                                        <  2:2120844/60‑1 (MQ=255)

                                                   ataCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCttt                                                                        >  1:2120844/1‑60 (MQ=255)

                                                   ataCTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTCTCACTCAATAATGTATTACAAc                                         >  2:3123823/1‑91 (MQ=255)

                                                     aCTAGTTGTCGTATTACCAAATCCTTTAACATGACAATCATCATGCATATCTAGCTTTGAAGATGTTGCACTCAATAATCTATTACAACGa                                       >  2:2962753/1‑91 (MQ=255)

                                                      cTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGAt                                      <  2:2619872/91‑1 (MQ=255)

                                                       tAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATc                                     >  1:931592/1‑91 (MQ=255)

                                                         gTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCaa                                   >  1:1322804/1‑91 (MQ=255)

                                                          ttgtcgtgttaaaggatttggtaatacgacaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCaaa                                  >  1:2585048‑M2/33‑91 (MQ=255)

                                                          TTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCaaa                                  >  1:1681949‑M1/1‑91 (MQ=255)

                                                            gtcgtgttaaaggatttggtattacgacagTCATCATGCATATCTAGCTTTGAAGATGTTTCAATCAATAATGATTTACAACGATCAAact                                >  2:1154261‑M2/31‑90 (MQ=255)

                                                            gtcgtgttaaaggatttggtaatacgacaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAAcc                                >  2:1299479‑M2/31‑91 (MQ=255)

                                                            GTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAAcc                                <  1:2185942‑M1/91‑1 (MQ=255)

                                                              CGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCa                              <  2:1523331‑M1/91‑1 (MQ=255)

                                                              CGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCa                              <  2:1522725‑M1/91‑1 (MQ=255)

                                                                tgttaaaggatttggtaatacgacaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATg                            >  1:548027‑M2/27‑91 (MQ=255)

                                                                TATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGCTCAAACCCATg                            <  2:1106360‑M1/91‑1 (MQ=255)

                                                                TATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATg                            >  2:2360766‑M1/1‑91 (MQ=255)

                                                                TATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATg                            <  2:1425278‑M1/91‑1 (MQ=255)

                                                                  ttACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGAAGTTTCACTCAATAATGTATTACACCGATCAAACCCATGAc                          >  2:3710469/1‑91 (MQ=255)

                                                                   tACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACt                         >  1:3652207/1‑91 (MQ=255)

                                                                    aCCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACta                        >  1:671484/1‑91 (MQ=255)

                                                                     ccAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACtaa                       >  1:1912473/1‑91 (MQ=255)

                                                                      cAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACtaat                      <  2:2249621/91‑1 (MQ=255)

                                                                      cAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACtaat                      >  2:865207/1‑91 (MQ=255)

                                                                       aaaTCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACtaata                     <  2:64776/91‑1 (MQ=255)

                                                                         aTCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTaataat                   >  1:715641/1‑91 (MQ=255)

                                                                             tttAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACa               >  2:1140248/1‑91 (MQ=255)

                                                                              ttAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACAt              >  2:591877/1‑91 (MQ=255)

                                                                              ttAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACAt              >  1:1119764/1‑91 (MQ=255)

                                                                              ttAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACAt              >  2:3528716/1‑91 (MQ=255)

                                                                              ttAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACAt              >  1:710347/1‑91 (MQ=255)

                                                                              ttAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACAt              <  1:3674476/91‑1 (MQ=255)

                                                                               tAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATc             >  2:573888/1‑91 (MQ=255)

                                                                                aaCACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCg            >  2:400893/1‑91 (MQ=255)

                                                                                aaCACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCg            >  1:550757/1‑91 (MQ=255)

                                                                                 acacGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGt           <  2:2401480/91‑1 (MQ=255)

                                                                                 acacGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGt           <  1:1409485/91‑1 (MQ=255)

                                                                                 acacGACAATCATCATGCATATCTAGCTTAGACGTTGTTTCACTCACTAATGTATTACAACGATCAAACCCATGACTAATAATGACATAGt           >  2:1263146/1‑91 (MQ=255)

                                                                                  cacGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTc          <  1:884860/91‑1 (MQ=255)

                                                                                  cacGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTc          <  1:3290221/91‑1 (MQ=255)

                                                                                   acgacaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCa         >  1:1420900‑M2/8‑91 (MQ=255)

                                                                                      acaaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAAt      >  2:3804953‑M2/5‑91 (MQ=255)

                                                                                       caaTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAAtt     <  2:941248‑M2/88‑1 (MQ=255)

                                                                                         aTCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTa   <  1:3267497‑M2/90‑1 (MQ=255)

TGTGATTTTGCATCATGATAAACAATATCTCCACACGCATAGATACCAGGTATACTAGTTGTCGTATTACCAAATCCTTTAACACGACAATCATCATGCATATCTAGCTTTGAAGATGTTTCACTCAATAATGTATTACAACGATCAAACCCATGACTAATAATGACATCGTCAAATTTAA  >  USA300TCH1516_ALE/2493094‑2493274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.