| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2494140 | 211 (1.110) | 10 (0.060) | 8/150 | NT | 4.7% | intergenic (‑166/+66) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2494178 | 207 (1.160) | intergenic (‑204/+28) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2494047‑2494140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacaTCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTATG < USA300TCH1516_ALE/2494178‑2494089 AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAAC < 1:389554/91‑1AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAAC < 2:1630783/91‑1AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAAC < 2:1631852/91‑1AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAAC > 2:408689/1‑91AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAAC > 1:2326831/1‑91 AGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACA < 2:2913506/91‑1 AGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACA < 2:2404379/91‑1 GCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACAC > 1:2497298/1‑91 GCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACAC > 2:3092711/1‑91 AATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACT > 2:839609/1‑91 ATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTT < 1:784970/91‑1 TAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTT < 1:839609/91‑1 TAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTT < 1:2170614/91‑1 ATCGCATAGTTAGACATGAATTATCAATAACTATCCCATCACAGTATAAAAACACACCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAA < 1:3883418/91‑1 TAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGT < 1:3201747/91‑1 AGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTT < 2:1078707/91‑1 CCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTA < 1:3427502/91‑1 CCATGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTA < 2:1113406/91‑1 TGAATTATCAATAACTATCCCATCACAATATAAAAACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATAT < 1:1943597/91‑1 ACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAAC < 2:1238400/91‑1 ACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAAC < 2:1238054/91‑1 ACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAAC > 2:3040301/1‑91 ACACATCATTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAAC < 2:3443959/91‑1 CACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACT > 2:1288551/1‑91 CACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACT < 2:2243080/91‑1 CACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACT > 1:2872893/1‑91 CACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATACTGTGATGGGATAGTTATTGATAATTCATGGCTAACg > 2:3835153/1‑90 ACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTA > 2:1554125/1‑91 CATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTAT > 2:3260626/1‑91 CATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTAT < 2:510346/91‑1 ATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTATG > 1:580/1‑91 ATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTATG > 1:1701585/1‑91 AAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2494047‑2494140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacaTCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTTTTTATATTGTGATGGGATAGTTATTGATAATTCATGGCTAACTATG < USA300TCH1516_ALE/2494178‑2494089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |