| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2494140 | 211 (1.110) | 10 (0.060) | 8/150 | NT | 4.7% | intergenic (‑166/+66) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2494178 | 207 (1.160) | intergenic (‑204/+28) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 282 total aligned reads displayed.
CATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACG > USA300TCH1516_ALE/2494051‑2494229 | aTTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACAcc > 1:1215973/1‑91 (MQ=255) aTTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACAcc > 2:3019369/1‑91 (MQ=255) ttATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCt < 1:1025400/91‑1 (MQ=255) taCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTc > 1:1815481/1‑91 (MQ=255) taCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTc > 2:1570982/1‑91 (MQ=255) taCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTc > 2:2310979/1‑91 (MQ=255) aCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCa > 2:365784/1‑91 (MQ=255) tATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCaaa > 1:3734829/1‑91 (MQ=255) tATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATCATCAATAACTATCCCATCACAATATAAAAACACACCTTTCaaa > 1:3869769/1‑91 (MQ=255) ttAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGt < 2:2834312/91‑1 (MQ=255) atatTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAg < 1:1656208/91‑1 (MQ=255) atatTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAg < 1:457092/91‑1 (MQ=255) atatTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAg < 1:2114780/91‑1 (MQ=255) ttATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaac > 2:726458/1‑91 (MQ=255) atatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaa < 2:1128602/91‑1 (MQ=255) tatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaac < 1:222435/91‑1 (MQ=255) tatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaac > 2:3459881/1‑91 (MQ=255) tatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaac > 2:597716/1‑91 (MQ=255) tatTGCTAAAATAAATCGCATAGTTAGCCATGAATTATCTATAACTATCCCATGACAATATAAAAACACACCTTTCAAAGTAAGAaacaac < 1:3602758/91‑1 (MQ=255) atTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAacaaca < 2:2119219/91‑1 (MQ=255) ttGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAAcaacaa < 1:3068685/91‑1 (MQ=255) ttGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAAcaacaa < 2:187101/91‑1 (MQ=255) ttAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGt > 2:1604869/1‑91 (MQ=255) tAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGtt < 2:3433069/91‑1 (MQ=255) aaataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTcc > 1:2500360/1‑91 (MQ=255) aaataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTcc > 1:889618/1‑91 (MQ=255) aataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACAtctttcaaaggaacattgttgtttcttact > 2:839609‑M1/1‑61 (MQ=255) aataaatCGCATAGTTAGCCATGAACTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCt < 2:3355387/91‑1 (MQ=255) ataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACAtctttcaaaggaacattgttgtttcttactt < 1:784970‑M1/91‑32 (MQ=255) ataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCtt < 1:1846714/91‑1 (MQ=255) ataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCtt < 2:1282649/91‑1 (MQ=255) taaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCttt < 1:3558861/91‑1 (MQ=255) taaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCttt > 2:630256/1‑91 (MQ=255) taaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCttt < 2:3170503/91‑1 (MQ=255) aaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTg < 2:1746587/91‑1 (MQ=255) aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa > 1:3476327/1‑91 (MQ=255) aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa > 2:1862095/1‑91 (MQ=255) aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa < 1:2819561/91‑1 (MQ=255) aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa > 1:707125/1‑91 (MQ=255) gCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGa > 2:2939058/1‑91 (MQ=255) gCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGa > 2:3722189/1‑91 (MQ=255) gCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGa > 2:2615417/1‑91 (MQ=255) cATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAt > 1:1701585‑M2/1‑90 (MQ=255) cATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAt > 1:580‑M2/1‑90 (MQ=255) aTAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtg < 2:510346‑M2/91‑3 (MQ=255) aGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg > 1:2872893‑M2/1‑87 (MQ=255) ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta < 2:3390010/91‑1 (MQ=255) ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta < 2:3054984/91‑1 (MQ=255) tAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat < 1:318406/91‑1 (MQ=255) tAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat < 2:3709082/91‑1 (MQ=255) tAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat > 2:2676660/1‑91 (MQ=255) gCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTatat > 1:3251978/1‑91 (MQ=255) ccATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAtt > 1:3383827/1‑91 (MQ=255) aTGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAtttt < 1:850636/91‑1 (MQ=255) tGAATTATCAATAACTATCCCATCACAATATAAAAACACAtctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatat < 1:1943597‑M1/91‑52 (MQ=255) aaTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTa > 2:1318029/1‑91 (MQ=255) aaTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTa > 2:530459/1‑91 (MQ=255) aTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAg < 2:2012413/91‑1 (MQ=255) aTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAg < 1:3647155/91‑1 (MQ=255) ttATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGt < 2:1322564/91‑1 (MQ=255) aTCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTc > 1:2356207/1‑91 (MQ=255) cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa > 2:2590113/1‑91 (MQ=255) aaTACCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAg > 1:3062129/1‑91 (MQ=255) aaTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAg < 2:1805691/91‑1 (MQ=255) aTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGt < 2:1016467/91‑1 (MQ=255) tAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGtt > 2:2196588/1‑91 (MQ=255) aaCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTta > 2:2470011/1‑91 (MQ=255) aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat < 1:630081/91‑1 (MQ=255) cTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtata < 1:3092711/91‑1 (MQ=255) tATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTatat < 1:1680035/91‑1 (MQ=255) aTCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAtttt < 2:1453231/91‑1 (MQ=255) cacaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAtttttt > 2:418776/1‑91 (MQ=255) tataAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAg > 2:601632/1‑91 (MQ=255) tataAAAACACACCTTGCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAg < 2:1102572/91‑1 (MQ=255) ataAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGa > 1:2747142/1‑91 (MQ=255) ataAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGa > 1:1763837/1‑91 (MQ=255) taAAAACACATCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGAc > 1:2838412/1‑91 (MQ=255) aaaaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACt < 1:529829/91‑1 (MQ=255) aaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtca > 2:3273493/1‑91 (MQ=255) aaaCACACCTTTCAAAGTAAGAAACAACAATGCTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtca > 1:1053255/1‑91 (MQ=255) aaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat > 1:2011982/1‑91 (MQ=255) aaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat > 1:2201258/1‑91 (MQ=255) acacacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc > 2:2030565/1‑91 (MQ=255) acacacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc > 1:3694729/1‑91 (MQ=255) acacacCTTTCAAAGAAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc < 2:690376/91‑1 (MQ=255) acacAtctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatattgtgatgggatagttattgataattcatggctaac < 2:1238400‑M1/91‑87 (MQ=255) acacAtctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatattgtgatgggatagttattgataattcatggctaac < 2:1238054‑M1/91‑87 (MQ=255) cacatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatattgtgatgggatagttattgataattcatggctaact < 2:2243080‑M1/91‑88 (MQ=255) cacatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatattgtgatgggatagttattgataattcatggctaact > 2:1288551‑M1/1‑4 (MQ=255) cacatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatactgtgatgggatagttattgataattcatggctaacg > 2:3835153‑M1/1‑4 (MQ=255) cacacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatca < 2:2812149/91‑1 (MQ=255) acatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtttttatattgtgatgggatagttattgataattcatggctaacta > 2:1554125‑M1/1‑3 (MQ=255) acacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtgtttttatattgtgatgggatagttattgataattcatggctaacta < 1:3201747‑M2/91‑51 (MQ=255) acacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCAc > 1:2061138/1‑91 (MQ=255) cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg < 1:1261680/91‑1 (MQ=255) cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg > 1:1520113/1‑91 (MQ=255) cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg < 1:353592/91‑1 (MQ=255) cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg < 1:408738/91‑1 (MQ=255) cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg > 2:1819826/1‑91 (MQ=255) cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg < 2:3251978/91‑1 (MQ=255) | CATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACG > USA300TCH1516_ALE/2494051‑2494229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |