BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2494140	211 (1.110)	10 (0.060)	8/150	NT	4.7%	intergenic (‑166/+66)	USA300HOU_RS12835/USA300HOU_RS12845	Ferredoxin‑‑NADP reductase/hypothetical protein
*	?	USA300TCH1516_ALE	= 2494178	207 (1.160)	10 (0.060)	8/150	NT	4.7%	intergenic (‑204/+28)	USA300HOU_RS12835/USA300HOU_RS12845	Ferredoxin‑‑NADP reductase/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 268 total aligned reads displayed.

GCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAG  >  USA300TCH1516_ALE/2494088‑2494268

gCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGa                                                                                            >  2:623715/1‑91 (MQ=255)

gCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGa                                                                                            >  2:2939058/1‑91 (MQ=255)

 cATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAt                                                                                           >  1:580‑M2/1‑90 (MQ=255)

 cATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAt                                                                                           >  1:1701585‑M2/1‑90 (MQ=255)

  aTAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtg                                                                                          <  2:510346‑M2/91‑3 (MQ=255)

    cgtTAGCCATGAATTATCAATAACTATCCCATCACAGTATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg                                                                                        >  2:3835153‑M2/2‑87 (MQ=255)

     gTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtgt                                                                                       <  2:1238054‑M2/91‑6 (MQ=255)

      ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCATAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                      <  2:1843142/91‑1 (MQ=255)

      ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                      <  2:2590593/91‑1 (MQ=255)

      ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                      <  2:2018810/91‑1 (MQ=255)

      ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                      <  2:2828720/91‑1 (MQ=255)

      ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                      <  2:3054984/91‑1 (MQ=255)

       tAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                                                                     <  1:318406/91‑1 (MQ=255)

          ccATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAtt                                                                                  <  1:36991/91‑1 (MQ=255)

          ccATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAtt                                                                                  >  2:2710857/1‑91 (MQ=255)

          ccATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAtt                                                                                  >  1:3383827/1‑91 (MQ=255)

          ccATGAAGTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAAGGTTCCTTTGAAAGATGTGTATAtt                                                                                  <  1:167157/91‑1 (MQ=255)

            aTGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAtttt                                                                                <  1:850636/91‑1 (MQ=255)

               aaTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTa                                                                             <  1:581260/91‑1 (MQ=255)

               aaTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTa                                                                             >  2:530459/1‑91 (MQ=255)

                aTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAg                                                                            >  2:2089193/1‑91 (MQ=255)

                 ttATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGt                                                                           >  1:3558189/1‑91 (MQ=255)

                 ttATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGt                                                                           <  2:1322564/91‑1 (MQ=255)

                   aTCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTc                                                                         >  2:877163/1‑91 (MQ=255)

                    tCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCt                                                                        >  2:724396/1‑91 (MQ=255)

                     cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCtt                                                                       >  2:2568258/1‑90 (MQ=255)

                        tAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGtt                                                                    >  2:2196588/1‑91 (MQ=255)

                         aaCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTta                                                                   >  2:3829346/1‑91 (MQ=255)

                          aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat                                                                  >  2:192763/1‑91 (MQ=255)

                          aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat                                                                  <  1:630256/91‑1 (MQ=255)

                          aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat                                                                  <  2:1305994/91‑1 (MQ=255)

                           cTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtata                                                                 <  1:3092711/91‑1 (MQ=255)

                                 cATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                                                           <  2:332870/91‑1 (MQ=255)

                                  aTCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTGGTTCTAGTTATATTAtttt                                                          <  2:3393471/91‑1 (MQ=255)

                                    cacaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAtttttt                                                        >  2:418776/1‑91 (MQ=255)

                                     acaATATAAAAACACACCTTTCAAAGTAATAAACAACTTTGTTCCTTTGAAAGATGTTTATATTTTTTAGTTCTAGTTATATTATTTTGTa                                                       <  2:593061/91‑1 (MQ=255)

                                       aaTATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATTTGTATATTTTTTAGTTCTAGTTATATTATTTTTTaaa                                                     <  1:3281566/91‑1 (MQ=255)

                                       aaTATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTaaa                                                     <  2:2201767/91‑1 (MQ=255)

                                          ataAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGa                                                  >  1:2747142/1‑91 (MQ=255)

                                          ataAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGa                                                  >  1:1544615/1‑91 (MQ=255)

                                           taAAAACACATCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGAc                                                 >  1:2838412/1‑91 (MQ=255)

                                           taAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtgtttttatattgtgatgggatagttattgataattcatgg                                                 <  2:1113406‑M2/91‑44 (MQ=255)

                                              aaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtca                                              >  2:3273493/1‑91 (MQ=255)

                                               aaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat                                             >  1:2201258/1‑91 (MQ=255)

                                               aaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat                                             <  2:1586356/91‑1 (MQ=255)

                                               aaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat                                             >  1:2011982/1‑91 (MQ=255)

                                                acacacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc                                            >  1:3694729/1‑91 (MQ=255)

                                                acacacCTTTCAAAGAAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc                                            <  2:690376/91‑1 (MQ=255)

                                                 cacacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatca                                           <  1:3530879/91‑1 (MQ=255)

                                                 cacacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatca                                           <  2:2812149/91‑1 (MQ=255)

                                                  acacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCAc                                          <  2:1473287/91‑1 (MQ=255)

                                                  acacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCAc                                          >  1:2061138/1‑91 (MQ=255)

                                                   cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg                                         <  1:408738/91‑1 (MQ=255)

                                                   cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg                                         <  2:3251978/91‑1 (MQ=255)

                                                   cacCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg                                         >  1:1520113/1‑91 (MQ=255)

                                                     ccTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATCTTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTg                                       >  1:1726712/1‑91 (MQ=255)

                                                     ccTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTg                                       <  1:1264831/91‑1 (MQ=255)

                                                      cTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTgg                                      <  2:1082291/91‑1 (MQ=255)

                                                       tttCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGt                                     >  1:3617033/1‑91 (MQ=255)

                                                       tttCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGt                                     >  1:3262015/1‑91 (MQ=255)

                                                            aaGTAAGAAACAACAATGTTCCTTTGAAAGAtgtgtttttatattgtgatgggatagttattgataattcatggctaactatgcgatttat                                <  1:784970‑M2/91‑61 (MQ=255)

                                                            aaGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCttt                                >  2:3718269/1‑91 (MQ=255)

                                                             aGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTa                               >  1:3468463/1‑91 (MQ=255)

                                                             aGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTa                               >  1:516310/1‑91 (MQ=255)

                                                              gTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTaa                              <  2:3675936/91‑1 (MQ=255)

                                                              gTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTaa                              <  1:298807/91‑1 (MQ=255)

                                                               tAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAg                             >  2:1195850/1‑91 (MQ=255)

                                                                aaGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTCGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGa                            <  2:3404048/91‑1 (MQ=255)

                                                                aaGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTATAAGa                            >  2:3568994/1‑91 (MQ=255)

                                                                 aGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGaa                           <  1:2283217/91‑1 (MQ=255)

                                                                 aGAAACAACAATGTTCCTTTGAAAGATGTG‑AAATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAt                          <  2:1812864/91‑1 (MQ=255)

                                                                  gAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAt                          >  2:1453202/1‑91 (MQ=255)

                                                                  gAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAt                          >  1:2881612/1‑91 (MQ=255)

                                                                  gAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAt                          <  1:2362455/91‑1 (MQ=255)

                                                                   aaaCAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAtt                         <  2:3476327/91‑1 (MQ=255)

                                                                    aacaacAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTg                        >  2:3118600/1‑91 (MQ=255)

                                                                      caacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCt                      >  1:2935644/1‑91 (MQ=255)

                                                                      caacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCt                      <  2:2326831/91‑1 (MQ=255)

                                                                      caacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCt                      >  1:1007790/1‑91 (MQ=255)

                                                                        acaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTg                    <  1:3848179/91‑1 (MQ=255)

                                                                        acaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTg                    >  2:2621876/1‑91 (MQ=255)

                                                                          aaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTc                  <  1:2318644/91‑1 (MQ=255)

                                                                          aaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTc                  >  2:2012543/1‑91 (MQ=255)

                                                                            tGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCtt                >  2:1727217/1‑91 (MQ=255)

                                                                             gTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTa               >  1:2121367/1‑91 (MQ=255)

                                                                              ttCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaa              >  2:1692974/1‑91 (MQ=255)

                                                                               tCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaaa             <  1:3423119/91‑1 (MQ=255)

                                                                                 cTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAg           <  2:2863307/91‑1 (MQ=255)

                                                                                 cTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAg           <  1:1063670/91‑1 (MQ=255)

                                                                                  tttGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAgg          <  2:1255053/91‑1 (MQ=255)

                                                                                   ttGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGa         <  1:365784/91‑1 (MQ=255)

                                                                                   ttGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGAATTaaaaaaa         <  2:1766213/91‑4 (MQ=255)

                                                                                    tGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGaa        <  1:2590113/91‑1 (MQ=255)

                                                                                     gAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGaaa       <  1:183962/91‑1 (MQ=255)

                                                                                      aaaGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGaaaa      >  1:1779876/1‑91 (MQ=255)

                                                                                       aaGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGaaaaa     >  1:3065107/1‑91 (MQ=255)

                                                                                       aaGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGaaaaa     >  1:3787767/1‑91 (MQ=255)

                                                                                          aTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAg  >  1:3055715/1‑91 (MQ=255)

                                                                                          aTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAg  >  1:917011/1‑91 (MQ=255)

                                                                                          aTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAg  <  1:145844/91‑1 (MQ=255)

GCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAG  >  USA300TCH1516_ALE/2494088‑2494268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.