| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2499443 = | 176 (0.920) | 16 (0.090) | 6/142 | NT | 10.1% | intergenic (‑20/‑163) | treP_2/USA300HOU_RS12875 | PTS system trehalose‑specific EIIBC component/hypothetical protein |
| ? | USA300TCH1516_ALE | 2499482 = | 129 (0.760) | intergenic (‑59/‑124) | treP_2/USA300HOU_RS12875 | PTS system trehalose‑specific EIIBC component/hypothetical protein | |||||
CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2499541‑2499443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > USA300TCH1516_ALE/2499482‑2499571 CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGA < 1:938105/91‑1CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGA < 1:938170/91‑1CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGA < 1:2241086/91‑1CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGA < 1:2241085/91‑1 TCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACC < 1:11815/91‑1 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG < 2:854046/91‑1 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG < 1:2052833/91‑1 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG < 2:2778696/91‑1 AAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGT > 2:64565/1‑91 AAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTT < 1:3042850/91‑1 AAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTT > 2:474780/1‑91 AATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC > 2:1657696/1‑91 AATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC > 1:981054/1‑91 AATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGCTACAATAAAGTGGAATAAATGGAACCGGTTC > 2:1908986/1‑91 AATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAATCGGTTCCAAAAATATTTGCAACACTGTATTATCATTTTATATAAACAC > 2:3119903/1‑91 TTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACC > 1:1102957/1‑91 CCGGTTACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTT > 1:1115872/1‑91 CCGGTTACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTT > 1:1116046/1‑91 TACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAG > 2:3621075/1‑91 TACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAG > 1:222983/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 1:3245451/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 2:446638/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 2:3631630/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 1:2229667/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 2:2259232/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 2:585655/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 2:3142113/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 2:2694797/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 2:1399691/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 1:293874/1‑91 ACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATAC < 1:2955458/91‑1 ACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATAC < 2:3643109/91‑1 ACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATAC > 2:1777284/1‑91 ACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATAC < 2:1700226/91‑1 ACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATAC > 1:2593329/1‑91 CCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACT < 1:1413792/91‑1 CGGTTCCAGAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTCCACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 2:376768/91‑1 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA > 1:2675097/1‑91 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 1:2216458/91‑1 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 1:1991964/91‑1 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 1:1991773/91‑1 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 1:3352936/91‑1 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 2:376156/91‑1 GTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACA < 1:960090/91‑1 GTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACA < 1:821714/91‑1 TTCCAAAAATATTTGCGACACTCTATTATCATTTTATATAAGCACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACAT < 2:431320/91‑1 TCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG > 1:3334099/1‑91 TCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG > 2:1266821/1‑91 TCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG < 2:2693177/91‑1 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC < 1:567596/91‑1 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > 2:3493726/1‑91 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > 1:3007575/1‑91 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > 2:1166517/1‑91 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG > 2:3881883/1‑90 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG < 1:3881883/90‑1 CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2499541‑2499443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > USA300TCH1516_ALE/2499482‑2499571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |