BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2499443 =	176 (0.920)	16 (0.090)	6/142	NT	10.1%	intergenic (‑20/‑163)	treP_2/USA300HOU_RS12875	PTS system trehalose‑specific EIIBC component/hypothetical protein
*	?	USA300TCH1516_ALE	2499482 =	129 (0.760)	16 (0.090)	6/142	NT	10.1%	intergenic (‑59/‑124)	treP_2/USA300HOU_RS12875	PTS system trehalose‑specific EIIBC component/hypothetical protein

Only 100 of 221 total aligned reads displayed.

AAAATTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGCA  >  USA300TCH1516_ALE/2499392‑2499572

 aaaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCa                                                                                           <  2:1460266/91‑1 (MQ=255)

 aaaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCa                                                                                           <  1:3638798/91‑1 (MQ=255)

  aaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaa                                                                                          <  1:2856335/91‑1 (MQ=255)

  aaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaa                                                                                          <  1:2855855/91‑1 (MQ=255)

  aaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaa                                                                                          <  1:3515993/91‑1 (MQ=255)

   aTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaa                                                                                         <  1:2346857/91‑1 (MQ=255)

    tttCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaaa                                                                                        >  1:938106/1‑91 (MQ=255)

     ttcttcTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaaaa                                                                                       <  1:609991/91‑1 (MQ=255)

     ttcttcTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaaaa                                                                                       >  1:895540/1‑91 (MQ=255)

      tcttctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAat                                                                                      <  1:1177232/91‑1 (MQ=255)

      tcttctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAat                                                                                      <  1:2734655/91‑1 (MQ=255)

         tctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATAtt                                                                                   >  1:2446562/1‑91 (MQ=255)

          cttcGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATAttt                                                                                  <  2:143096/88‑1 (MQ=255)

           tGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTg                                                                                 >  2:1517728/1‑91 (MQ=255)

           tGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTg                                                                                 >  2:2133022/1‑91 (MQ=255)

            gCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGc                                                                                <  1:3224150/91‑1 (MQ=255)

            gCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGc                                                                                >  2:3146674/1‑91 (MQ=255)

            gCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGc                                                                                <  1:3562503/91‑1 (MQ=255)

             cGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCa                                                                               <  2:5741/91‑1 (MQ=255)

               gATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAac                                                                             <  1:2189082/91‑1 (MQ=255)

               gATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAac                                                                             <  1:1371334/91‑1 (MQ=255)

                  tGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACAct                                                                          <  1:1819745/91‑1 (MQ=255)

                  tGCTTAAAATTCATATATTTAGTCTCCTAATTAGAACCGGTGCCATTTAGTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACAct                                                                          <  2:2945391/91‑1 (MQ=255)

                   gCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACActc                                                                         >  1:1307135/1‑91 (MQ=255)

                     ttATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCta                                                                       >  2:3417000/1‑91 (MQ=255)

                       ataATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtatt                                                                     <  1:3656495/91‑1 (MQ=255)

                       ataATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtatt                                                                     <  1:3030860/91‑1 (MQ=255)

                          aTTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATc                                                                  <  2:2626999/91‑1 (MQ=255)

                          aTTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATc                                                                  <  1:3430133/91‑1 (MQ=255)

                           ttCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCa                                                                 <  2:1140882/91‑1 (MQ=255)

                              atatatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAttt                                                              <  2:888724/91‑1 (MQ=255)

                                ttatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAtttga                                                            <  2:2033769/90‑3 (MQ=255)

                                atatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTta                                                            <  1:3774660/91‑1 (MQ=255)

                                atatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTta                                                            >  1:64565/1‑91 (MQ=255)

                                 tatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtat                                                           <  2:2237188/91‑1 (MQ=255)

                                   tttAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTTCAAAAATATTTGCAACACTCTATTATCATTTtatat                                                         >  2:3055407/1‑91 (MQ=255)

                                     tAGCCTCTTAATAAGAACCGGTTCCATTTATTCCACTTTATTGGAAAAAAAAAAAAAAATATTTGCAACACTCTATTATCATTTTATGTaa                                                       <  2:3438435/91‑1 (MQ=255)

                                       gCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAac                                                     >  2:3684998/1‑91 (MQ=255)

                                        cctcctAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAaca                                                    >  1:2599258/1‑91 (MQ=255)

                                           cctAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCt                                                 >  1:1780208/1‑91 (MQ=255)

                                            ctAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTa                                                >  2:1821840/1‑91 (MQ=255)

                                            ctAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTa                                                >  2:823373/1‑91 (MQ=255)

                                               aTTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTacac                                             >  2:3616551/1‑91 (MQ=255)

                                                ttggaaccggttacaataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACAcc                                            >  1:1102957‑M2/43‑91 (MQ=255)

                                                   GAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAtt                                         >  2:1657696‑M1/1‑91 (MQ=255)

                                                    AACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAttt                                        >  2:474780‑M1/1‑91 (MQ=255)

                                                     ACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAtttt                                       >  2:64565‑M1/1‑91 (MQ=255)

                                                      ccggttacaataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAttttt                                      >  1:1116046‑M2/37‑91 (MQ=255)

                                                       CGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTg                                     <  2:854046‑M1/91‑1 (MQ=255)

                                                       CGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTg                                     <  2:2778696‑M1/91‑1 (MQ=255)

                                                        GGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGa                                    <  1:11815‑M1/91‑1 (MQ=255)

                                                           TCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAg                                 <  1:2241085‑M1/91‑1 (MQ=255)

                                                            ccATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                <  1:1031438/91‑1 (MQ=255)

                                                            ccATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  1:1431117/1‑91 (MQ=255)

                                                            ccATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  1:3817460/1‑91 (MQ=255)

                                                            ccATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  2:2003245/1‑91 (MQ=255)

                                                            acaataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  2:3631630‑M2/31‑91 (MQ=255)

                                                            acaataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  1:2229667‑M2/31‑91 (MQ=255)

                                                             caataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  2:2694797‑M2/30‑91 (MQ=255)

                                                             caataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  2:2259232‑M2/30‑91 (MQ=255)

                                                             cATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  2:1972001/1‑91 (MQ=255)

                                                             cATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  2:2639246/1‑91 (MQ=255)

                                                             cATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  1:1809964/1‑91 (MQ=255)

                                                              aTTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcgc                              <  1:812477/91‑1 (MQ=255)

                                                               tttATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGca                             <  2:2389208/91‑1 (MQ=255)

                                                               tttATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGca                             >  1:506204/1‑91 (MQ=255)

                                                                ttATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcat                            <  1:803230/91‑1 (MQ=255)

                                                                ttATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcat                            <  1:1925788/91‑1 (MQ=255)

                                                                  aTTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattc                          >  2:929446/1‑91 (MQ=255)

                                                                  aTTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattc                          >  2:421638/1‑91 (MQ=255)

                                                                  aTTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattc                          >  1:1457747/1‑91 (MQ=255)

                                                                   ttCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattca                         <  2:1158672/91‑1 (MQ=255)

                                                                   ttCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattca                         <  2:1335537/91‑1 (MQ=255)

                                                                    tCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattcat                        <  2:1895468/91‑1 (MQ=255)

                                                                     ccACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattcatt                       <  1:3146674/91‑1 (MQ=255)

                                                                           tATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACTCCATTTTTGATAGCGCATTCATTTTTAtt                 <  2:3371213/91‑1 (MQ=255)

                                                                            aTTGTTACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTg                <  2:3139542/91‑1 (MQ=255)

                                                                            aTTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTg                <  1:1821840/91‑1 (MQ=255)

                                                                            aTTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTg                >  1:7503/1‑91 (MQ=255)

                                                                             ttGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTACTGc               >  1:3499606/1‑91 (MQ=255)

                                                                              tGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCt              <  2:2416401/91‑1 (MQ=255)

                                                                              tGTAACCGGGTCCAAAAATATTTGCAACACTCTATTAACATTTTATATAAACACCTACACCATTTTTGTTAGCGTTTTCATTTTTATTGCt              >  2:1916732/1‑91 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTg                                     <  2:124941/67‑1 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTg                                     >  1:124941/1‑67 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCta             >  1:3297429/1‑91 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCta             <  2:1175999/91‑1 (MQ=255)

                                                                                tAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCtat            <  1:628846/91‑1 (MQ=255)

                                                                                  accggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTAtac          >  2:1777284‑M2/9‑91 (MQ=255)

                                                                                  accggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTAtac          <  1:2955458‑M2/83‑1 (MQ=255)

                                                                                   ccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTAtact         <  1:1413792‑M2/84‑1 (MQ=255)

                                                                                    cggttcCAGAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTCCACCATTTTTGATAGCGCATTCATTTTTATTGCTAtacta        <  2:376768‑M2/85‑1 (MQ=255)

                                                                                    cggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTAtacta        <  1:1991964‑M2/85‑1 (MQ=255)

                                                                                    cggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTAtacta        >  1:2675097‑M2/7‑91 (MQ=255)

                                                                                    cggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTAtacta        <  1:3352936‑M2/85‑1 (MQ=255)

                                                                                      gttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACa      <  1:960090‑M2/87‑1 (MQ=255)

                                                                                      gttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACa      <  1:821714‑M2/87‑1 (MQ=255)

                                                                                       ttcCAAAAATATTTGCGACACTCTATTATCATTTTATATAAGCACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACAt     <  2:431320‑M2/88‑1 (MQ=255)

                                                                                         cCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATg    <  1:3881883‑M2/89‑1 (MQ=255)

                                                                                          cAAAAATATTTGCAACACTCTATTATCATTTTATATAAACTCCTACACCATTTTTGATAGCGCATTAATTTTTATTGCTATACTAcatgca  >  2:3601411/1‑91 (MQ=255)

                                                                                          cAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTAcatgca  >  2:2872687/1‑91 (MQ=255)

AAAATTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGCA  >  USA300TCH1516_ALE/2499392‑2499572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.