| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2511885 = | 194 (1.020) | 17 (0.100) | 6/144 | NT | 9.4% | intergenic (+194/+64) | mta/nreC | HTH‑type transcriptional activator mta/Oxygen regulatory protein NreC |
| ? | USA300TCH1516_ALE | 2511923 = | 152 (0.890) | intergenic (+232/+26) | mta/nreC | HTH‑type transcriptional activator mta/Oxygen regulatory protein NreC | |||||
ATATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2511982‑2511885‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA > USA300TCH1516_ALE/2511923‑2512012 ATATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGG < 1:1087484/91‑1ATATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGG < 1:1087592/91‑1 TATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGC > 2:3031950/1‑91 TATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGC < 1:3458594/91‑1 TATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGC < 1:3458676/91‑1 TATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGC < 1:1784345/91‑1 ATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAGTATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCG > 1:1035746/1‑91 ATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCG < 1:3563155/91‑1 ATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCG < 2:2809156/91‑1 TGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGC > 2:2075317/1‑91 TGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGC > 2:3883803/1‑91 TGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGC < 1:2762146/91‑1 GCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCT > 1:1888711/1‑91 CATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTT > 2:203888/1‑91 CATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTT < 1:2518581/91‑1 CATTGAAAAAGAAATTATTAGAGTTTGAGAGTTTGACAGTAATATAATTCAGTATAACAGCGCGAGAGGAAATGATTATCTTCTGGCGCTT < 2:3830364/91‑1 ATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATAAAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTT < 2:2311645/91‑1 TTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTTT > 1:570300/1‑91 TTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTTT < 2:1436620/91‑1 ATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTC > 2:67955/1‑91 GCGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCA > 1:1094887/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTACCACTCTAATAATTTCTTTTTCAATGCAT > 1:128496/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCAT > 1:3033512/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCAT > 2:3562079/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCAT > 1:2832297/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCAT > 1:1847913/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCAT > 2:619819/1‑91 CGCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCAT > 2:1642948/1‑91 GCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATA > 2:3120445/1‑91 GCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATA > 2:47065/1‑91 GCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATA > 2:1886334/1‑91 GCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATA > 2:903853/1‑91 GCGAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATA > 1:1794108/1‑91 GAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATT > 2:150060/1‑91 GAGAGGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATT > 1:450462/1‑91 GGAAATGATTATCTTCTGGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAAC > 2:3247783/1‑91 GCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTT < 1:3025057/91‑1 GCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTT > 1:3391300/1‑91 CGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTT < 2:2276737/91‑1 GCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTA > 1:1923665/1‑91 GCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTA < 1:2020729/91‑1 GCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTA < 1:3073746/91‑1 CTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAA < 1:650758/91‑1 CTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAA > 1:43868/1‑91 CTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAA > 1:43857/1‑91 TTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAt > 2:28111/1‑90 TTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGC < 1:1567385/91‑1 TTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGC < 1:2695050/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 2:382600/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC > 1:1142662/1‑91 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 2:886653/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 2:759143/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 1:447316/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 2:3675778/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 2:2660368/91‑1 TTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCC < 2:3242137/91‑1 TATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA > 2:3119292/1‑91 TATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA < 1:3281392/91‑1 TATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTGCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA < 2:3482427/91‑1 TATACTGAATTATATTAATTTCAAACTCGATAACTCTAATAATTGCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA < 2:3482801/91‑1 ATATGCATTGAAAAAGAAATTATTAGAGTTTTAGAGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2511982‑2511885‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA > USA300TCH1516_ALE/2511923‑2512012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |