New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2511885 =194 (1.020)17 (0.100) 6/144 NT 9.4% intergenic (+194/+64) mta/nreC HTH‑type transcriptional activator mta/Oxygen regulatory protein NreC
?USA300TCH1516_ALE 2511923 = 152 (0.890)intergenic (+232/+26) mta/nreC HTH‑type transcriptional activator mta/Oxygen regulatory protein NreC

Only 100 of 256 total aligned reads displayed.

TACCTTTGCAAAGCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAA  >  USA300TCH1516_ALE/2511795‑2511975
                                                                                          |                                                                                          
tggcttaaagagtaaacctgagctagttgaatatgcattgaaaaagcaattattagagttttagagtttgaaattaatataattcagtata                                                                                            <  2:3482427‑M1/1‑1 (MQ=255)
tggcttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtata                                                                                            >  2:3119292‑M1/91‑91 (MQ=255)
tggcttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtata                                                                                            <  1:3281392‑M1/1‑1 (MQ=255)
 ggcttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtataa                                                                                           <  2:2660368‑M1/2‑1 (MQ=255)
 ggcttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtataa                                                                                           <  2:3242137‑M1/2‑1 (MQ=255)
 ggcttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtataa                                                                                           <  2:3675778‑M1/2‑1 (MQ=255)
  gcttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtataaa                                                                                          <  1:2695050‑M1/3‑1 (MQ=255)
  ccTTTGCAAAGCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACaaa                                                                                          >  1:2226275/1‑91 (MQ=255)
   cTTTGCAAAGCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACaaaa                                                                                         <  1:3197596/91‑1 (MQ=255)
    ttaaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAg                                                                                        >  1:43868‑M1/87‑91 (MQ=255)
     taaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAgc                                                                                       <  1:3073746‑M1/6‑1 (MQ=255)
     taaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAgc                                                                                       <  1:2020729‑M1/6‑1 (MQ=255)
      aaagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAgcg                                                                                      <  2:2276737‑M1/7‑1 (MQ=255)
       aagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAgcgc                                                                                     >  1:3391300‑M1/84‑91 (MQ=255)
       aagagtaaacctgagctagttgaatatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAgcgc                                                                                     <  1:3025057‑M1/8‑1 (MQ=255)
         aaaGCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCa                                                                                   >  2:2692135/1‑91 (MQ=255)
          aaGCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCag                                                                                  <  1:2606231/91‑1 (MQ=255)
            gCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCagaa                                                                                >  1:1906560/1‑91 (MQ=255)
            gCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCagaa                                                                                >  1:3342931/1‑91 (MQ=255)
             cGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCagaag                                                                               >  1:1965232/1‑91 (MQ=255)
                 ttAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATaa                                                                           >  1:1775769/1‑91 (MQ=255)
                 ttAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATaa                                                                           >  1:2241730/1‑91 (MQ=255)
                  tAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAGTATATTTCGAAACATACAAAAGCGCCAGAAGATAAt                                                                          >  1:1646982/1‑91 (MQ=255)
                  tAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAAt                                                                          >  1:2172835/1‑91 (MQ=255)
                   aGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGCTTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATc                                                                         >  2:3315765/1‑91 (MQ=255)
                    gTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCa                                                                        <  2:3827686/91‑1 (MQ=255)
                     tataGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCAt                                                                       <  2:2444722/91‑1 (MQ=255)
                        aGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTc                                                                    >  2:3499557/1‑91 (MQ=255)
                        aGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTc                                                                    >  2:3540303/1‑91 (MQ=255)
                          gTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTc                                                                    <  2:1163363/89‑1 (MQ=255)
                          gTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTc                                                                    >  1:1163363/1‑89 (MQ=255)
                          gTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCct                                                                  <  1:2375943/91‑1 (MQ=255)
                          gTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCct                                                                  <  1:837830/91‑1 (MQ=255)
                            tACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATTATTTCctct                                                                >  1:3727460/1‑91 (MQ=255)
                             aCCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATCTTTCGAAACATACAAAAGCGCCAGAAGATCATCATTTCCtctc                                                               >  1:3882863/1‑91 (MQ=255)
                             aCCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCtctc                                                               <  2:809391/91‑1 (MQ=255)
                             aCCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCtctc                                                               <  2:212707/91‑1 (MQ=255)
                             aCCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCtctc                                                               >  1:365393/1‑91 (MQ=255)
                               tatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTcgc                                                             >  2:47065‑M1/60‑91 (MQ=255)
                               tatgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTcgc                                                             >  2:1886334‑M1/60‑91 (MQ=255)
                                atgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTcgcg                                                            >  1:2832297‑M1/59‑91 (MQ=255)
                                atgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTcgcg                                                            >  1:3033512‑M1/59‑91 (MQ=255)
                                atgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTcgcg                                                            >  2:619819‑M1/59‑91 (MQ=255)
                                 tgcattgaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTCgcgc                                                           >  1:1094887‑M1/58‑91 (MQ=255)
                                 aaaggagaaaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCgcgc                                                           >  1:3190027/1‑91 (MQ=255)
                                   aggagaaaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCtt                                                         >  2:414650/1‑91 (MQ=255)
                                     gagaaaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCtttt                                                       <  2:3165200/91‑1 (MQ=255)
                                     gagaaaggaTTAGGTTCCATTAGAAAAATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCtttt                                                       <  2:3429085/91‑1 (MQ=255)
                                       gaaaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTtat                                                     >  2:9088/1‑91 (MQ=255)
                                       gaaaaagaaattattagagttttagagtttgaaattaatataattcagtatAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTtat                                                     >  2:67955‑M1/52‑91 (MQ=255)
                                        aaaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTtata                                                    <  2:2923152/91‑1 (MQ=255)
                                         aaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATAc                                                   <  2:3034780/91‑1 (MQ=255)
                                         aaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATAc                                                   >  1:1053435/1‑91 (MQ=255)
                                         aaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATAc                                                   >  2:859868/1‑91 (MQ=255)
                                         aaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATAc                                                   >  2:2944988/1‑91 (MQ=255)
                                                aGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATta                                            >  2:1214676/1‑91 (MQ=255)
                                                aGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATta                                            <  2:2469145/91‑1 (MQ=255)
                                                aGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGAGCCAGAAGATAATCATTTTCTCTCGCGCTTTTATACTGAATta                                            >  2:3609165/1‑91 (MQ=255)
                                                aGGTTCCATTCAATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATTATCTTTTCCTCTCGCGCTTTTATACTGAATta                                            <  2:509845/91‑1 (MQ=255)
                                                 ggTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATtat                                           >  1:2194952/1‑91 (MQ=255)
                                                  gTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATtata                                          >  1:1146854/1‑91 (MQ=255)
                                                    tCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATAtt                                        <  2:1306178/91‑1 (MQ=255)
                                                    tCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATAtt                                        <  1:3453864/91‑1 (MQ=255)
                                                     ccATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTa                                       >  1:3831523/1‑91 (MQ=255)
                                                     ccATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTa                                       >  1:3582449/1‑91 (MQ=255)
                                                       aTTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAt                                     >  2:757204/1‑91 (MQ=255)
                                                       aTTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAt                                     <  2:2807850/91‑1 (MQ=255)
                                                        ttCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAtt                                    <  1:755379/91‑1 (MQ=255)
                                                          cGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTc                                  <  1:2804260/91‑1 (MQ=255)
                                                          cGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTc                                  >  2:823901/1‑91 (MQ=255)
                                                            aTTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaa                                >  1:920893/1‑91 (MQ=255)
                                                            aTTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaa                                <  1:1867382/91‑1 (MQ=255)
                                                               tataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaact                             >  2:1062100/1‑91 (MQ=255)
                                                               tataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaact                             <  1:1680297/91‑1 (MQ=255)
                                                                ataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactc                            <  1:1899119/91‑1 (MQ=255)
                                                                  aaaaaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactcta                          >  1:1904713/1‑91 (MQ=255)
                                                                   aaaaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaa                         <  1:2404215/91‑1 (MQ=255)
                                                                    aaaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaa                        >  2:2795021/1‑91 (MQ=255)
                                                                      aaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaac                      <  2:326675/91‑1 (MQ=255)
                                                                       aaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaact                     >  1:3121738/1‑91 (MQ=255)
                                                                        atatatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCatactctaaaactc                    <  1:2973890/91‑1 (MQ=255)
                                                                         tatatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaactct                   >  1:1797580/1‑91 (MQ=255)
                                                                          atatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaactcta                  >  1:759143/1‑91 (MQ=255)
                                                                           tatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAaactctaaaactctaa                 >  1:2508546/1‑91 (MQ=255)
                                                                            atTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaat                >  2:2568240/1‑91 (MQ=255)
                                                                             tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata               >  1:3811493/1‑91 (MQ=255)
                                                                             tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata               >  2:489454/1‑91 (MQ=255)
                                                                             tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata               >  1:1638661/1‑91 (MQ=255)
                                                                             tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata               >  1:2713683/1‑91 (MQ=255)
                                                                              ttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaataa              <  2:1906560/91‑1 (MQ=255)
                                                                               tCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTaataat             <  2:567740/91‑1 (MQ=255)
                                                                               tCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTaataat             <  2:1721048/91‑1 (MQ=255)
                                                                               tCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTaataat             <  1:2914194/91‑1 (MQ=255)
                                                                                 gAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAAttt           <  1:1522808/91‑1 (MQ=255)
                                                                                 gAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAAttt           >  1:2005264/1‑91 (MQ=255)
                                                                                  aaaCATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATGTTAATTTCAAACTCTAAAACTCTAATAATTTc          <  2:3811493/91‑1 (MQ=255)
                                                                                      aTACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCtttt      >  2:1557837/1‑91 (MQ=255)
                                                                                       tACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCttttt     >  1:1331927/1‑91 (MQ=255)
                                                                                          AAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCaa  >  1:570300‑M1/1‑91 (MQ=255)
                                                                                          AAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCaa  <  2:1436620‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
TACCTTTGCAAAGCGAATTAGTATAGGTTACCGAAAGGAGAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAA  >  USA300TCH1516_ALE/2511795‑2511975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.