BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2511885 =	194 (1.020)	17 (0.100)	6/144	NT	9.4%	intergenic (+194/+64)	mta/nreC	HTH‑type transcriptional activator mta/Oxygen regulatory protein NreC
*	?	USA300TCH1516_ALE	2511923 =	152 (0.890)	17 (0.100)	6/144	NT	9.4%	intergenic (+232/+26)	mta/nreC	HTH‑type transcriptional activator mta/Oxygen regulatory protein NreC

Only 100 of 237 total aligned reads displayed.

GAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA  >  USA300TCH1516_ALE/2511834‑2512012

  aaggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATAc                                                                                        >  2:859868/1‑91 (MQ=255)

   aggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACt                                                                                       >  1:2698140/1‑91 (MQ=255)

    ggaTTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTg                                                                                      >  2:1244695/1‑91 (MQ=255)

         gggTTCCATTCGATTTATAAAAAAATATATTTCGAAGCATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATta                                                                                 <  2:3834595/90‑1 (MQ=255)

         aGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATta                                                                                 <  2:2469145/91‑1 (MQ=255)

         aGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATta                                                                                 >  2:1214173/1‑91 (MQ=255)

         aGGTTCCATTCAATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATTATCTTTTCCTCTCGCGCTTTTATACTGAATta                                                                                 <  2:509845/91‑1 (MQ=255)

          ggTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATtat                                                                                >  1:2194952/1‑91 (MQ=255)

             tCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATAtt                                                                             <  1:3453864/91‑1 (MQ=255)

              ccATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTa                                                                            >  2:610364/1‑91 (MQ=255)

              ccATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTa                                                                            >  1:3582449/1‑91 (MQ=255)

                aTTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAt                                                                          <  2:3215896/91‑1 (MQ=255)

                aTTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAt                                                                          <  1:1059568/91‑1 (MQ=255)

                aTTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAt                                                                          <  2:2807850/91‑1 (MQ=255)

                 ttCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAAtt                                                                         <  1:755379/91‑1 (MQ=255)

                   cGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTc                                                                       <  1:2804260/91‑1 (MQ=255)

                     aTTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaa                                                                     <  1:1868455/91‑1 (MQ=255)

                       ttATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaac                                                                   <  1:3749760/91‑1 (MQ=255)

                        tataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaact                                                                  >  2:1062100/1‑91 (MQ=255)

                        tataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaact                                                                  <  1:1680345/91‑1 (MQ=255)

                        aataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaact                                                                  <  2:2887728/90‑1 (MQ=255)

                         ataAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactc                                                                 <  1:1899119/91‑1 (MQ=255)

                           aaaaaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactcta                                                               >  1:1904713/1‑91 (MQ=255)

                             aaaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaa                                                             >  2:2795021/1‑91 (MQ=255)

                              aaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaa                                                            >  1:2381433/1‑91 (MQ=255)

                              aaaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaa                                                            <  1:1244695/91‑1 (MQ=255)

                               aaaTATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaac                                                           <  2:332711/91‑1 (MQ=255)

                               aaaTATATTGCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaacgctaaaac                                                           >  1:1950165/1‑91 (MQ=255)

                                  tatatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaactct                                                        >  1:1797580/1‑91 (MQ=255)

                                  tatatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaactct                                                        <  1:2077610/91‑1 (MQ=255)

                                  tatatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaactct                                                        >  1:2944257/1‑91 (MQ=255)

                                   atatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCaaactctaaaactcta                                                       <  2:473008/91‑1 (MQ=255)

                                    tatTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAaactctaaaactctaa                                                      <  1:1632238/91‑1 (MQ=255)

                                     atTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaat                                                     >  2:2568240/1‑91 (MQ=255)

                                      tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata                                                    >  1:3811493/1‑91 (MQ=255)

                                      tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata                                                    >  1:2552207/1‑91 (MQ=255)

                                      tttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaata                                                    <  1:1157814/91‑1 (MQ=255)

                                       ttCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCtaataa                                                   <  2:1906127/91‑1 (MQ=255)

                                        tCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTaataat                                                  <  2:567740/91‑1 (MQ=255)

                                         cGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAAtt                                                 <  1:2868207/91‑1 (MQ=255)

                                          gAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAAttt                                                <  1:1522808/91‑1 (MQ=255)

                                           aaaCATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTc                                               <  1:2359730/91‑1 (MQ=255)

                                             aCATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCtt                                             <  2:2929405/91‑1 (MQ=255)

                                              cATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCttt                                            >  1:763854/1‑91 (MQ=255)

                                                 ataaaagcgcgagaggaaatgattatcttctggcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTc                                         >  2:67955‑M2/41‑91 (MQ=255)

                                                 aCAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTc                                         >  2:352535/1‑91 (MQ=255)

                                                  cAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAACTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCa                                        >  1:3869380/1‑91 (MQ=255)

                                                   AAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCaa                                       <  2:1436620‑M1/91‑1 (MQ=255)

                                                     AAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATg                                     <  1:2518581‑M1/91‑1 (MQ=255)

                                                     AAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATg                                     >  2:203888‑M1/1‑91 (MQ=255)

                                                       GCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCa                                   <  1:2762146‑M1/91‑1 (MQ=255)

                                                        cgcgagaggaaatgattatcttctggcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCat                                  >  2:3562079‑M2/34‑91 (MQ=255)

                                                        cgcgagaggaaatgattatcttctggcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCat                                  >  2:1642948‑M2/34‑91 (MQ=255)

                                                        CGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCat                                  <  1:3563155‑M1/91‑1 (MQ=255)

                                                        CGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATACTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCat                                  >  1:1035746‑M1/1‑91 (MQ=255)

                                                         gcgagaggaaatgattatcttctggcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCata                                 >  2:47065‑M2/33‑91 (MQ=255)

                                                         GCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCata                                 <  1:1784345‑M1/91‑1 (MQ=255)

                                                         GCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCata                                 >  2:3031950‑M1/1‑91 (MQ=255)

                                                          CCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCatat                                <  1:1087592‑M1/91‑1 (MQ=255)

                                                            agaagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTc                              >  2:650758/1‑91 (MQ=255)

                                                            agaagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTc                              >  1:592534/1‑91 (MQ=255)

                                                            agaagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTc                              <  2:1852646/91‑1 (MQ=255)

                                                            agaagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTc                              >  1:3143044/1‑91 (MQ=255)

                                                            agaagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTc                              >  2:2624528/1‑91 (MQ=255)

                                                              aagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCaa                            <  2:2708288/91‑1 (MQ=255)

                                                              aagaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATAATAATTTGAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCaa                            >  2:3608952/1‑91 (MQ=255)

                                                              aagaTAATCATTTCCTCTCGCGCTTTTATAATGAATTATATTAATTTCAAAATCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCaa                            <  1:3139343/91‑1 (MQ=255)

                                                               ggaaatgattatcttctggcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAAc                           >  2:3247783‑M2/27‑91 (MQ=255)

                                                               agaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAAc                           <  1:823901/91‑1 (MQ=255)

                                                               agaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAAc                           >  2:2082715/1‑91 (MQ=255)

                                                                gaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACt                          <  1:1650302/91‑1 (MQ=255)

                                                                gaTAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACt                          <  2:188409/91‑1 (MQ=255)

                                                                    aTCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCt                      <  2:1926308/91‑1 (MQ=255)

                                                                    aTCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCt                      >  2:1556965/1‑91 (MQ=255)

                                                                    aTCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCt                      <  1:2444103/91‑1 (MQ=255)

                                                                     tCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTc                     <  2:303721/91‑1 (MQ=255)

                                                                      cATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCa                    >  2:3733466/1‑91 (MQ=255)

                                                                        tttCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAgg                  <  2:2425341/91‑1 (MQ=255)

                                                                         ttCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGt                 <  1:1336359/91‑1 (MQ=255)

                                                                          tCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGtt                >  1:3465003/1‑91 (MQ=255)

                                                                            ctctCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTa              >  1:706936/1‑91 (MQ=255)

                                                                            ctctCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTa              <  1:1424468/91‑1 (MQ=255)

                                                                            ctctCGCGCTTTTATACTGAATTATATTAATCTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATTCATATTCAACTGGCTCAGGTTTa              >  2:2968933/1‑91 (MQ=255)

                                                                              ctcGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCATGTTTAct            >  1:1929524/1‑91 (MQ=255)

                                                                              ctcGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTAct            <  2:3882863/91‑1 (MQ=255)

                                                                               tcGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTAttc           >  2:336487/1‑91 (MQ=255)

                                                                                 gcgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCtt         <  1:3025057‑M2/83‑1 (MQ=255)

                                                                                  cgcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCttt        <  2:2276737‑M2/84‑1 (MQ=255)

                                                                                   gcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTa       <  1:3073746‑M2/85‑1 (MQ=255)

                                                                                   gcttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTa       <  1:2020729‑M2/85‑1 (MQ=255)

                                                                                    cttttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTaa      >  1:43868‑M2/6‑91 (MQ=255)

                                                                                       ttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGcc   <  2:759143‑M2/89‑1 (MQ=255)

                                                                                       ttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGcc   >  1:1142662‑M2/3‑91 (MQ=255)

                                                                                       ttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGcc   <  2:886653‑M2/89‑1 (MQ=255)

                                                                                       ttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGcc   <  2:382600‑M2/89‑1 (MQ=255)

                                                                                       ttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGcc   <  2:3675778‑M2/89‑1 (MQ=255)

                                                                                       ttATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGcc   <  1:447316‑M2/89‑1 (MQ=255)

                                                                                        tATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCa  <  1:3281392‑M2/90‑1 (MQ=255)

                                                                                        tATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCa  >  2:3119292‑M2/2‑91 (MQ=255)

                                                                                        tATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTGCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCa  <  2:3482427‑M2/90‑1 (MQ=255)

GAAAGGATTAGGTTCCATTCGATTTATAAAAAAATATATTTCGAAACATACAAAAGCGCCAGAAGATAATCATTTCCTCTCGCGCTTTTATACTGAATTATATTAATTTCAAACTCTAAAACTCTAATAATTTCTTTTTCAATGCATATTCAACTAGCTCAGGTTTACTCTTTAAGCCA  >  USA300TCH1516_ALE/2511834‑2512012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.