| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2520876 = | 151 (0.790) | 15 (0.080) | 10/150 | NT | 9.5% | intergenic (‑245/+64) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase |
| ? | USA300TCH1516_ALE | 2520917 = | 144 (0.810) | intergenic (‑286/+23) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase | |||||
TGCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2520970‑2520876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTGC > USA300TCH1516_ALE/2520917‑2521006 TGCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGC > 2:822181/1‑91TGCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGC > 2:818494/1‑91TGCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGC > 2:1205400/1‑91TGCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGC > 1:1677093/1‑91 GCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCC > 1:2739356/1‑91 GATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA < 1:1093508/91‑1 GATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA > 2:683072/1‑91 GATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA < 1:2187095/91‑1 GATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA > 1:1199661/1‑91 GATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA > 1:1445331/1‑91 ATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTct > 2:3753837/1‑89 TAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACAC > 1:1083115/1‑91 AAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACT > 1:240981/1‑91 AAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACT > 1:241371/1‑91 AATGAATAAGTAAGGTTTCAACCGAGAGAATATACTCGTGTTGAAGCCTTACTCATTCATTTATTTTTTATAAATTAGTGACATAACACTt > 2:3695514/1‑90 GAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTAT > 2:960173/1‑91 AAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGC > 1:3788898/1‑91 GTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAT > 2:1144104/1‑91 GTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAT > 1:1659424/1‑91 GTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAT > 2:1489176/1‑91 TAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATC > 2:3276959/1‑91 TAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATC > 1:489289/1‑91 GGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGC > 2:397489/1‑91 GTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCA > 2:2502981/1‑91 CAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGAT > 2:2098907/1‑91 CAACCGAGAGAATATATTCGTGTTGAAGCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGAT > 2:2098705/1‑91 CCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTG < 1:3348561/91‑1 CCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTG < 1:1615299/91‑1 CTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGC < 2:2430105/91‑1 CTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGC > 2:2838426/1‑91 CTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGC > 1:2939559/1‑91 CTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGC < 2:2062835/91‑1 TTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCT > 2:27801/1‑91 TTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCT < 1:2772848/91‑1 TACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTG < 2:3700158/91‑1 ACTTATTCATTTATTTTTTATAAATTAGTGGCATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTGC < 1:1375786/91‑1 ACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTGC < 2:2384295/91‑1 TGCAGATGCTAATACAGTGTTATGTCACTAATTTATAAAAAATAAATGAATAAGTAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2520970‑2520876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTGC > USA300TCH1516_ALE/2520917‑2521006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |