| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2520876 = | 151 (0.790) | 15 (0.080) | 10/150 | NT | 9.5% | intergenic (‑245/+64) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase |
| ? | USA300TCH1516_ALE | 2520917 = | 144 (0.810) | intergenic (‑286/+23) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase | |||||
Only 100 of 206 total aligned reads displayed.
GTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTGC > USA300TCH1516_ALE/2520827‑2521006 | atgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttac > 2:1489176‑M1/50‑91 (MQ=255) gctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttactt > 1:3788898‑M1/48‑91 (MQ=255) tGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTAt > 1:2636152/1‑91 (MQ=255) gCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTAtt < 1:2018484/91‑1 (MQ=255) cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTc < 1:1341877/91‑1 (MQ=255) cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGATGAAACCTTACTTATTc > 1:3329660/1‑91 (MQ=255) ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa < 1:1709825/91‑1 (MQ=255) aagtgttatgtcactaatttataaaaaataaatgaatgagTAAGGCTTCAACACGAGTATATTCTCTCGGTTGAAACCTTACTTATTCatt > 2:3695514‑M1/41‑91 (MQ=255) gtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta > 1:1083115‑M1/39‑91 (MQ=255) gCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttat < 1:3520279/91‑1 (MQ=255) cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt > 1:1774238/1‑91 (MQ=255) tCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTAtttttt < 2:447033/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:2706799/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta > 2:2690336/1‑91 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 2:566964/91‑1 (MQ=255) tAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtat < 2:3192287/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 2:919631/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 2:904438/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 1:3787730/91‑1 (MQ=255) aaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaa < 1:2806382/91‑1 (MQ=255) aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa > 1:2960337/1‑91 (MQ=255) aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa > 2:2038447/1‑91 (MQ=255) tCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAAt < 1:2041012/91‑1 (MQ=255) gTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTa < 2:2394366/91‑1 (MQ=255) gTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATACTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTa < 1:3458310/91‑1 (MQ=255) tCAAATTCGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGt < 1:1931946/91‑1 (MQ=255) cAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTg > 1:502048/1‑91 (MQ=255) aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa > 1:52826/1‑91 (MQ=255) aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa > 1:151082/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc < 2:18339/91‑1 (MQ=255) aTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACa < 2:2644796/91‑1 (MQ=255) aTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACa < 2:2400243/91‑1 (MQ=255) aTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACa < 2:1503723/91‑1 (MQ=255) ttGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATa < 1:2698754/91‑1 (MQ=255) tGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATaa > 2:1594424/1‑91 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac < 1:478043/91‑1 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac > 2:1942898/1‑91 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac < 2:2310706/91‑1 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACt < 2:1404310/91‑1 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:2907911/1‑91 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:1271120/1‑91 (MQ=255) aaatgaataagtaaggtttcaaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:241371‑M2/53‑91 (MQ=255) aaatgaataagtaaggtttcaaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:240981‑M2/53‑91 (MQ=255) caACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTg < 1:2617592/91‑1 (MQ=255) aaCGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGt < 1:1143962/91‑1 (MQ=255) gACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTAtt < 2:3781981/91‑1 (MQ=255) aCAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTa < 2:381036/91‑1 (MQ=255) aCAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTa < 1:737958/91‑1 (MQ=255) aaaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGc > 1:224232/1‑91 (MQ=255) aaaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTCATTCATTTATTTTTTATACATTATTGACATAACACCGTATTAGc > 2:955148/1‑91 (MQ=255) aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCa < 2:1807420/91‑1 (MQ=255) aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCa > 2:1734162/1‑91 (MQ=255) gtaaggtttcaaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAt > 2:1144104‑M2/43‑91 (MQ=255) gtaaggtttcaaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAt > 1:1659424‑M2/43‑91 (MQ=255) TAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc > 2:683072‑M1/1‑91 (MQ=255) TAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc < 1:1093508‑M1/91‑1 (MQ=255) TAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc < 1:2187095‑M1/91‑1 (MQ=255) ggtttcaaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGc > 2:397489‑M2/39‑91 (MQ=255) GGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGc > 1:2739356‑M1/1‑91 (MQ=255) gtttcaaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCa > 2:2502981‑M2/38‑91 (MQ=255) GCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCa > 1:1677093‑M1/1‑91 (MQ=255) GCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCa > 2:818494‑M1/1‑91 (MQ=255) cTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACGTAACACTGTATTAGCATCTGCAc > 2:3279357/1‑91 (MQ=255) cTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCAc < 2:311190/91‑1 (MQ=255) cTTCAACACGAATATATTCTCTCGATTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCAc < 2:3617271/91‑1 (MQ=255) tCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGa > 2:2174353/1‑91 (MQ=255) caaccgagagaatatattcgtgttgaagccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGAt > 2:2098907‑M2/34‑91 (MQ=255) aaCACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATc < 1:3588570/91‑1 (MQ=255) acacGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCg > 1:1386913/1‑91 (MQ=255) cacGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCgg > 2:3594311/1‑91 (MQ=255) cacGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCgg < 2:2047537/91‑1 (MQ=255) cGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGtt > 1:3070776/1‑91 (MQ=255) gAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTg < 1:2535876/91‑1 (MQ=255) tatatTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGaaa < 1:3436116/91‑1 (MQ=255) atatTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAat < 2:1325420/91‑1 (MQ=255) ttCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatata > 2:2426566/1‑91 (MQ=255) ttCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatata < 1:3850779/91‑1 (MQ=255) ttCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatata < 1:788670/91‑1 (MQ=255) tctctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatatat < 2:1170294/91‑1 (MQ=255) ctctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatatata < 2:1106930/91‑2 (MQ=255) tctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGt < 1:1812248/91‑1 (MQ=255) ctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGtt > 2:2419644/1‑91 (MQ=255) ctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGtt < 2:3300441/91‑1 (MQ=255) ctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGtt < 1:3667459/91‑1 (MQ=255) tcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTa > 2:553614/1‑91 (MQ=255) cGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTAc < 1:319246/91‑1 (MQ=255) gTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTAc > 2:1123797/1‑89 (MQ=255) ttGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACAtt < 1:1141678/91‑1 (MQ=255) gAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACAtttt > 1:1392018/1‑91 (MQ=255) aaaCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTc > 1:1657051/1‑91 (MQ=255) aaCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCt < 2:52667/91‑1 (MQ=255) aCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCtt > 2:2072357/1‑91 (MQ=255) ccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtg < 1:3348561‑M2/86‑1 (MQ=255) ccttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtg < 1:1615299‑M2/86‑1 (MQ=255) cttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtgc > 2:2838426‑M2/5‑91 (MQ=255) cttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtgc < 2:2062835‑M2/87‑1 (MQ=255) ttaCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtgct > 2:27801‑M2/4‑91 (MQ=255) taCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtgctg < 2:3700158‑M2/89‑1 (MQ=255) aCTTATTCATTTATTTTTTATAAATTAGTGGCATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtgctgc < 1:1375786‑M2/90‑1 (MQ=255) aCTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTtgctgc < 2:2384295‑M2/90‑1 (MQ=255) | GTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTTGCTGC > USA300TCH1516_ALE/2520827‑2521006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |