| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2520876 = | 151 (0.790) | 15 (0.080) | 10/150 | NT | 9.5% | intergenic (‑245/+64) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase |
| ? | USA300TCH1516_ALE | 2520917 = | 144 (0.810) | intergenic (‑286/+23) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase | |||||
Only 100 of 201 total aligned reads displayed.
AATAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATC > USA300TCH1516_ALE/2520787‑2520966 | cagcaagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagta < 2:3700158‑M1/2‑1 (MQ=255)aaTAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATa < 2:2762787/91‑1 (MQ=255) agcaagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagtaa < 1:2772848‑M1/3‑1 (MQ=255) agcaagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagtaa > 2:27801‑M1/89‑91 (MQ=255) aTAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATaa < 1:1053066/91‑1 (MQ=255) aTAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATaa > 2:2218270/1‑91 (MQ=255) gcaagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagtaag > 1:2939559‑M1/88‑91 (MQ=255) gcaagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagtaag < 2:2430105‑M1/4‑1 (MQ=255) gcaagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagtaag > 2:2838426‑M1/88‑91 (MQ=255) caagaaaatgtaacatatatttcaaccgatcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAgg < 1:3348561‑M1/5‑1 (MQ=255) aCGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGc > 2:1003291/1‑91 (MQ=255) cGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCt > 1:401136/1‑91 (MQ=255) cGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCt < 1:1463172/91‑1 (MQ=255) gggATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCtt < 1:18430/91‑1 (MQ=255) gggATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCtt > 1:3117694/1‑91 (MQ=255) ggATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTc > 2:2041012/1‑91 (MQ=255) ggATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTc < 2:1392385/91‑1 (MQ=255) gATTTCATTGAAATGATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCa > 2:3298225/1‑91 (MQ=255) aTTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCaa < 2:2620360/91‑1 (MQ=255) aTTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCaa > 1:1706557/1‑91 (MQ=255) tttCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAac > 1:3479892/1‑91 (MQ=255) tttCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAac > 2:2027202/1‑91 (MQ=255) cATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACg > 2:1049585/1‑91 (MQ=255) cATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACg > 2:1050243/1‑91 (MQ=255) tGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAat < 2:3566622/91‑1 (MQ=255) aataatACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTCCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAatata < 2:2778677/91‑1 (MQ=255) aataatACACAATCAGGTATGGTCACGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAatata < 2:3360619/91‑1 (MQ=255) taataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATAtt > 1:2430105/1‑91 (MQ=255) taataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATAtt > 2:3844895/1‑91 (MQ=255) aataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtc > 1:92383/1‑91 (MQ=255) ataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtct < 1:1140395/91‑1 (MQ=255) taCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtctc < 1:3548369/91‑1 (MQ=255) acaATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCg > 2:3559715/1‑91 (MQ=255) acaATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCg > 2:2360327/1‑91 (MQ=255) caATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCgg < 1:377148/91‑1 (MQ=255) aTCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGtt < 1:1734594/91‑1 (MQ=255) tCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTg < 1:786811/91‑1 (MQ=255) tCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTg < 1:2621971/91‑1 (MQ=255) atcgtgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTg > 2:2098907‑M1/59‑91 (MQ=255) tgcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAc > 2:2502981‑M1/55‑91 (MQ=255) tATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcc > 2:2094993/1‑91 (MQ=255) tATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcc > 1:3802672/1‑91 (MQ=255) gcagatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcc > 2:397489‑M1/54‑91 (MQ=255) aTGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACct < 1:852854/91‑1 (MQ=255) gatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACctta > 1:489289‑M1/51‑91 (MQ=255) gatgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACctta > 2:3276959‑M1/51‑91 (MQ=255) gTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttac < 2:3180430/91‑1 (MQ=255) atgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttac > 1:1659424‑M1/50‑91 (MQ=255) atgctaatacagtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttac > 2:1144104‑M1/50‑91 (MQ=255) gCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTAtt < 1:2018484/91‑1 (MQ=255) cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTc < 1:1341877/91‑1 (MQ=255) cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGATGAAACCTTACTTATTc > 1:3329660/1‑91 (MQ=255) ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa < 2:3002559/91‑1 (MQ=255) agtgttatgtcactaatttataaaaaataaatgaataagTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattt > 1:240981‑M1/40‑91 (MQ=255) cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt > 1:1774564/1‑91 (MQ=255) tCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTAtttttt < 2:1706557/91‑1 (MQ=255) tCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTAtttttt < 2:447033/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta > 2:2690336/1‑91 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 2:566964/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:2706799/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 2:904438/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 1:3298225/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 1:3787746/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 2:919631/91‑1 (MQ=255) aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa < 2:1802603/91‑1 (MQ=255) aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa > 2:2038447/1‑91 (MQ=255) tCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAAt < 1:2041012/91‑1 (MQ=255) gTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTa < 2:2394481/91‑1 (MQ=255) gTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTa < 2:2393993/91‑1 (MQ=255) gTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATACTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTa < 1:3458310/91‑1 (MQ=255) tCAAATTCGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGt < 1:1931946/91‑1 (MQ=255) cAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTg < 1:1901870/91‑1 (MQ=255) cAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTg > 1:502048/1‑91 (MQ=255) aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa < 1:3028979/91‑1 (MQ=255) aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa > 1:151082/1‑91 (MQ=255) aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa > 1:52826/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc > 2:2080174/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc < 2:18339/91‑1 (MQ=255) aTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACa < 2:1503723/91‑1 (MQ=255) aTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACa < 2:2644796/91‑1 (MQ=255) tttGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACAt < 1:2657381/91‑1 (MQ=255) tGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATaa > 2:1594424/1‑91 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac < 2:2310706/91‑1 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac > 2:1942898/1‑91 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac > 2:1484796/1‑91 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:2907911/1‑91 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:3700158/1‑91 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACt > 1:1271120/1‑91 (MQ=255) acaACGACAAATAAGGCTTCAACACGAATATATCCTCTCGGTTGAATCCTTACTTATTCCTTTATTTTTTATAAATTAGTGACATAACACt > 1:3096597/1‑91 (MQ=255) caACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTg < 1:2617592/91‑1 (MQ=255) aCAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTa < 2:381036/91‑1 (MQ=255) aCAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTa < 1:737958/91‑1 (MQ=255) aaaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGc > 1:224232/1‑91 (MQ=255) aaaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTCATTCATTTATTTTTTATACATTATTGACATAACACCGTATTAGc > 2:955148/1‑91 (MQ=255) aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCa > 1:1383631/1‑91 (MQ=255) aTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAt < 1:472603/91‑1 (MQ=255) aTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCAt < 1:2181189/91‑1 (MQ=255) TAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc > 2:683072‑M1/1‑91 (MQ=255) TAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc > 1:1199661‑M1/1‑91 (MQ=255) TAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc < 1:1093508‑M1/91‑1 (MQ=255) | AATAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATC > USA300TCH1516_ALE/2520787‑2520966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |