| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2525159 = | 214 (1.120) | 11 (0.060) | 7/148 | NT | 5.5% | coding (270/732 nt) | sirB | Sirohydrochlorin ferrochelatase |
| ? | USA300TCH1516_ALE | 2525195 = | 181 (1.030) | coding (234/732 nt) | sirB | Sirohydrochlorin ferrochelatase | |||||
GTTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2525254‑2525159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCG > USA300TCH1516_ALE/2525195‑2525283 GTTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGAC < 1:387622/91‑1GTTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGAC < 2:691823/91‑1GTTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGAC < 2:2068583/91‑1 TTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACG > 1:2367605/1‑91 TTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACG > 2:2018565/1‑91 TTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACG > 1:3258931/1‑91 TGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGG > 2:2101767/1‑91 TGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGG > 1:2627789/1‑91 TGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGG > 2:2024936/1‑91 TGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGG > 1:3858229/1‑91 TGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGG > 1:3858228/1‑91 GACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGGT > 2:1306203/1‑91 ACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGGTA > 1:2669169/1‑91 ACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGGTA < 1:1105812/91‑1 ATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAAT > 1:440970/1‑91 TACCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGT > 2:2025454/1‑91 ACCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTC > 1:2591638/1‑91 ACCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTC > 1:781342/1‑91 ACCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTC > 1:2752027/1‑91 CCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCA > 2:108000/1‑91 CCGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCA > 1:1995000/1‑91 CGAATATCGTTCATGAAATGAAACGACGGTATATCCTTGATATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAA > 2:3183978/1‑91 GAATATCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCCTTGCACTAAAGATTAGCAATGGTACAATTATAAAATGGTCAAC > 1:3883413/1‑91 TCGTTCATGAAATGGAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCAC > 1:2919446/1‑91 TCGTTCATGAAATGAAACGACGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCAC > 1:2919679/1‑91 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT > 1:515618/1‑91 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT < 1:2529333/91‑1 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT < 2:2344829/91‑1 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT < 2:2529500/91‑1 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT < 1:2529254/91‑1 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT < 2:3488875/91‑1 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT > 2:632372/1‑91 CGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATT < 1:1141559/91‑1 GGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTA > 1:3369199/1‑91 GTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTAC < 1:1352899/91‑1 TATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACC > 1:3581559/1‑91 ATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCG < 1:887330/91‑1 ATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCG < 1:3838923/91‑1 GTTGACCATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCGAATATCGTTCATGAAATGAAACGACGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2525254‑2525159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCG > USA300TCH1516_ALE/2525195‑2525283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |