BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2525159 =	214 (1.120)	11 (0.060)	7/148	NT	5.5%	coding (270/732 nt)	sirB	Sirohydrochlorin ferrochelatase
*	?	USA300TCH1516_ALE	2525195 =	181 (1.030)	11 (0.060)	7/148	NT	5.5%	coding (234/732 nt)	sirB	Sirohydrochlorin ferrochelatase

Only 100 of 240 total aligned reads displayed.

TCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTC  >  USA300TCH1516_ALE/2525105‑2525285

tctcATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGtata                                                                                            >  2:502874/1‑91 (MQ=255)

  tcATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATc                                                                                          >  2:3058241/1‑91 (MQ=255)

   cATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATcc                                                                                         <  1:74999/91‑1 (MQ=255)

     ttAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCtt                                                                                       <  1:2150688/91‑1 (MQ=255)

     ttAAAGGATGTGTGCCAAGTGGCTCACTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCtt                                                                                       >  2:2628091/1‑91 (MQ=255)

        aaGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTgag                                                                                    >  2:2271740/1‑91 (MQ=255)

          ggATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGAt                                                                                  <  1:822749/91‑1 (MQ=255)

          ggACGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTTAGAt                                                                                  <  1:3058241/91‑1 (MQ=255)

           gATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATa                                                                                 <  2:2732285/91‑1 (MQ=255)

           gATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATa                                                                                 <  2:599023/91‑1 (MQ=255)

           gATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATa                                                                                 <  1:3198464/91‑1 (MQ=255)

             tgtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAAt                                                                               <  2:1616802/91‑1 (MQ=255)

             tgtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAAt                                                                               >  2:653635/1‑91 (MQ=255)

              gtgtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATg                                                                              >  2:2839135/1‑91 (MQ=255)

                gtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCa                                                                            >  1:772727/1‑91 (MQ=255)

                gtgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCa                                                                            <  1:2563020/91‑1 (MQ=255)

                 tgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAt                                                                           <  2:2759623/91‑1 (MQ=255)

                 tgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAt                                                                           <  2:428743/91‑1 (MQ=255)

                 tgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAt                                                                           <  1:1744369/91‑1 (MQ=255)

                 tgCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAt                                                                           >  1:214548/1‑91 (MQ=255)

                   ccAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTg                                                                         >  1:655353/1‑91 (MQ=255)

                    cAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCtt                                                                                       >  1:3687810/1‑76 (MQ=255)

                    cAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCtt                                                                                       <  2:3687810/76‑1 (MQ=255)

                    cAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTgg                                                                        >  2:3846424/1‑90 (MQ=255)

                    cAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGc                                                                        <  1:123812/91‑1 (MQ=255)

                       gTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACt                                                                     <  1:2246593/91‑1 (MQ=255)

                       gTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACt                                                                     <  1:636860/91‑1 (MQ=255)

                          gCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTaaa                                                                  <  2:3404157/91‑1 (MQ=255)

                          gCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTaaa                                                                  <  2:1953803/91‑1 (MQ=255)

                            tCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGa                                                                >  1:2864716/1‑91 (MQ=255)

                            tCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCAGTGCACTAAAGa                                                                >  1:3520947/1‑91 (MQ=255)

                              gCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGAtt                                                              >  2:1303306/1‑91 (MQ=255)

                              gCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGAtt                                                              >  2:1032035/1‑91 (MQ=255)

                                ttACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAg                                                            <  1:608160/91‑1 (MQ=255)

                                 tACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGc                                                           <  1:2311287/91‑1 (MQ=255)

                                   cTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGA‑TAGCAAt                                                        <  2:2658108/91‑1 (MQ=255)

                                    ttCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTGAAGATTAGCAAt                                                        <  1:2981224/91‑1 (MQ=255)

                                    atgcattatctcaaggatataccgaatatcgttcatgaaatgaaacgacggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAAt                                                        >  1:440970‑M2/55‑91 (MQ=255)

                                     tCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATg                                                       <  1:2928621/91‑1 (MQ=255)

                                     tCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATg                                                       >  2:1961305/1‑91 (MQ=255)

                                      cTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATgg                                                      <  1:1126925/91‑1 (MQ=255)

                                      cTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATgg                                                      <  2:560105/91‑1 (MQ=255)

                                       tACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGt                                                     <  1:2802432/91‑1 (MQ=255)

                                       tACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGt                                                     >  1:1819528/1‑91 (MQ=255)

                                       tACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGt                                                     >  1:2487978/1‑91 (MQ=255)

                                        aCCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTa                                                    >  2:3530211/1‑91 (MQ=255)

                                        aCCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTa                                                    <  1:2297681/91‑1 (MQ=255)

                                         ccTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTAc                                                   >  2:1402379/1‑91 (MQ=255)

                                            ttATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAt                                                <  1:704059/91‑1 (MQ=255)

                                            ttATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAt                                                <  2:1488359/91‑1 (MQ=255)

                                             tATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAtt                                               >  2:2936879/1‑91 (MQ=255)

                                              aTGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAttt                                              <  2:2609975/91‑1 (MQ=255)

                                               tGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAAtttt                                             <  2:1836728/91‑1 (MQ=255)

                                                 tCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTaa                                           <  2:1102659/91‑1 (MQ=255)

                                                  cTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTaaa                                          >  2:210280/1‑91 (MQ=255)

                                                    ggATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAAt                                        >  2:3233162/1‑91 (MQ=255)

                                                       taccgaatatcgttcatgaaatgaaacgacggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGt                                     >  2:2025454‑M2/36‑91 (MQ=255)

                                                       TACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGt                                     >  1:2669169‑M1/1‑91 (MQ=255)

                                                        accgaatatcgttcatgaaatgaaacgacggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTc                                    >  1:2752027‑M2/35‑91 (MQ=255)

                                                         ccgaatatcgttcatgaaatgaaacgacggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCa                                   >  2:108000‑M2/34‑91 (MQ=255)

                                                          CGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCaa                                  >  1:2367605‑M1/1‑91 (MQ=255)

                                                          CGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCaa                                  >  1:3258931‑M1/1‑91 (MQ=255)

                                                           gaatatcgttcatgaaatgaaacgacggtatATCCTTGAGATAATGCCTTGCACTAAAGATTAGCAATGGTACAATTATAAAATGGTCAAc                                 >  1:3883413‑M2/32‑91 (MQ=255)

                                                           GTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAc                                 <  2:2068583‑M1/91‑1 (MQ=255)

                                                           GTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAc                                 <  1:387622‑M1/91‑1 (MQ=255)

                                                            tcgtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcc                                <  2:1861129/91‑1 (MQ=255)

                                                            tcgtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcc                                >  1:1049217/1‑91 (MQ=255)

                                                            tcgtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcc                                <  2:2419009/91‑1 (MQ=255)

                                                             cgtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAccc                               <  1:540379/91‑1 (MQ=255)

                                                             cgtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAccc                               >  1:2738896/1‑91 (MQ=255)

                                                              gtTTCATTTCATGAACGATATTCGGTATATTCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcccc                              >  2:826092/1‑91 (MQ=255)

                                                              gtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcccc                              >  1:91047/1‑91 (MQ=255)

                                                              gtTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAAcccc                              <  1:385879/91‑1 (MQ=255)

                                                                ttcatttcatGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCAc                            <  2:3271727/91‑1 (MQ=255)

                                                                   atttcatGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACttt                         >  2:1141559/1‑91 (MQ=255)

                                                                     ttcatGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGa                       >  2:2200239/1‑91 (MQ=255)

                                                                     ttcatGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGa                       <  2:1691332/91‑1 (MQ=255)

                                                                        atGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATc                    <  1:850411/91‑1 (MQ=255)

                                                                        atGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATc                    >  2:3160954/1‑91 (MQ=255)

                                                                            aCGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCaatg                <  2:3041944/91‑3 (MQ=255)

                                                                            aCGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcg                <  1:1569331/91‑1 (MQ=255)

                                                                             cGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcgt               >  1:1290296/1‑91 (MQ=255)

                                                                              gATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcgtc              <  2:3636508/91‑1 (MQ=255)

                                                                                tatTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcgtcgt            >  2:950417/1‑91 (MQ=255)

                                                                                tatTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcgtcgt            <  1:793765/91‑1 (MQ=255)

                                                                                tatTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAAcgtcgt            <  2:1181743/91‑1 (MQ=255)

                                                                                 atTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACgtcgtc           >  1:2047553/1‑91 (MQ=255)

                                                                                  ttCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCa          <  1:1557697/91‑1 (MQ=255)

                                                                                   tCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAt         >  1:2392330/1‑91 (MQ=255)

                                                                                    cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAtt        <  1:1141559‑M2/85‑1 (MQ=255)

                                                                                    cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAtt        <  2:3488875‑M2/85‑1 (MQ=255)

                                                                                    cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAtt        <  1:2529333‑M2/85‑1 (MQ=255)

                                                                                    cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAtt        <  2:2529500‑M2/85‑1 (MQ=255)

                                                                                    cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAtt        >  1:515618‑M2/7‑91 (MQ=255)

                                                                                    cggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCAtt        <  2:2344829‑M2/85‑1 (MQ=255)

                                                                                    cGGTATATCCTTGAGATAATGCATGGCACTAAAGAGAAGCAAAGGTACAACCTTAAGCTGTTTAACGCCACTTTGAATCAACGTTGTCAtt        <  2:616829/91‑1 (MQ=255)

                                                                                     ggtatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTa       >  1:3369199‑M2/6‑91 (MQ=255)

                                                                                       tatATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTAcc     >  1:3581559‑M2/4‑91 (MQ=255)

                                                                                        atATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCg    <  1:3838923‑M2/89‑1 (MQ=255)

                                                                                          atCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGtc  >  2:359522/1‑91 (MQ=255)

TCTCATTAAAGGATGTGTGCCAAGTGGCTCGCTTACTTCTACCTTTATGTCTGGATACCGTCGTTTCATTTCATGAACGATATTCGGTATATCCTTGAGATAATGCATTGCACTAAAGATTAGCAATGGTACAATTTTAAAATGGTCAACCCCACTTTGAATCAACGTCGTCATTACCGTC  >  USA300TCH1516_ALE/2525105‑2525285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.