| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2533537 = | 156 (0.820) | 25 (0.150) | 17/142 | NT | 14.7% | intergenic (+33/+64) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 2533595 = | 153 (0.910) | intergenic (+91/+6) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2533635‑2533537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > USA300TCH1516_ALE/2533595‑2533684 TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 2:3491647/91‑1TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC > 2:263820/1‑91TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC > 1:3779856/1‑91TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 2:3508393/91‑1TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 2:3491777/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 2:1288920/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 2:425848/91‑1 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT > 2:1588351/1‑91 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 1:1657997/91‑1 AGACGTTTCTTAAATGTTATAAATGAAGAAAAATCAATTACAACCACGTATCATTTTTTAGGATGCCGATGAAGCCATATACCTGATGCGT < 2:1534646/91‑1 GACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTG > 2:1493949/1‑91 ACGTTTCTTAAATGTTGTAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 1:3818142/91‑1 ACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG > 1:1580039/1‑91 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT < 1:3431910/91‑1 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT < 2:3013678/91‑1 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT > 2:2614030/1‑91 TTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 2:1053403/91‑1 TTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 1:1166805/91‑1 TTCTTAAATGTTATAAATGAAGATGAATCAAATAGAACCACGTATCATGTGTTGGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT < 2:3605365/91‑1 TTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT > 1:371406/1‑91 TTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT > 1:3452578/1‑91 AAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTG > 2:3801667/1‑91 TAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATACGTGGTTCTATTTGATTATTCT > 1:172819/1‑91 AATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTACTTGATTATGCTTC > 2:635086/1‑91 AAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTT > 2:2689976/1‑91 TCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATT > 1:2873226/1‑91 TCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATT > 1:3255717/1‑91 AACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAC > 2:410751/1‑91 AACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAC > 2:508902/1‑91 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTC > 1:34341/1‑91 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTC > 1:1209518/1‑91 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCT > 1:3489437/1‑91 CGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTT > 1:3444507/1‑91 TATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAA > 2:1193490/1‑91 TCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATT > 2:203912/1‑91 CATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTC > 2:2172224/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT < 2:1413393/91‑1 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 2:3720306/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 1:1492887/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 1:1413393/1‑91 TGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT > 2:1033122/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGCAACGTCTTAATTCTTC > 1:1554795/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 2:2780792/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 2:2780541/1‑91 TGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTGTAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGG < 2:2873226/91‑1 TGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGG < 2:3255717/91‑1 ATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCT > 2:2925238/1‑91 CGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCC < 1:2633949/91‑1 CGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCC < 1:240189/91‑1 CGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCC > 2:2571506/1‑91 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGACACGTCTCAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC > 2:3602970/1‑91 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC > 2:2905201/1‑91 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:842682/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 2:2087819/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 2:1090982/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 2:409902/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 2:231235/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:3585085/91‑1 TGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCC < 2:1568614/91‑1 TGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCC < 1:532346/91‑1 TGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCC < 1:1460780/91‑1 TGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCC < 1:1288920/91‑1 GGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCa > 2:3855631/1‑90 GTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTT < 2:845394/91‑1 TTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTG < 1:1215544/91‑1 TCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGT < 1:385034/91‑1 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT > 1:1409038/1‑91 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT > 1:1409139/1‑91 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT < 2:3622322/91‑1 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT < 2:2180050/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGGCGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:1115456/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 2:3312363/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > 2:3853624/1‑91 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:547200/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > 1:3834574/1‑91 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:3119920/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:3119847/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:1336392/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:1115413/91‑1 TATTTGATTATTCTTCATTGATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 2:1241874/91‑1 TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2533635‑2533537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > USA300TCH1516_ALE/2533595‑2533684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |