BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2533537 =	156 (0.820)	25 (0.150)	17/142	NT	14.7%	intergenic (+33/+64)	femA_3/tcyC_2	Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC
*	?	USA300TCH1516_ALE	2533595 =	153 (0.910)	25 (0.150)	17/142	NT	14.7%	intergenic (+91/+6)	femA_3/tcyC_2	Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC

Only 100 of 262 total aligned reads displayed.

AATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTCT  >  USA300TCH1516_ALE/2533505‑2533685

  tatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAtt                                                                                          <  1:417922/91‑1 (MQ=255)

  tatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAtt                                                                                          <  2:1141631/91‑1 (MQ=255)

  tatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAtt                                                                                          <  1:3041298/91‑1 (MQ=255)

    tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg                                                                                        <  2:50527/91‑1 (MQ=255)

    tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg                                                                                        <  2:2042260/91‑1 (MQ=255)

    aaatgttataaatgaagaataatcaaatagaaccacgtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTg                                                                                        >  2:3801667‑M2/87‑91 (MQ=255)

     cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa                                                                                       <  1:847999/91‑1 (MQ=255)

      gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATGCGTGGTTCTATTTGat                                                                                      >  2:2984878/1‑91 (MQ=255)

      gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                                      >  1:3190729/1‑91 (MQ=255)

      gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                                      >  1:1493949/1‑91 (MQ=255)

       cgccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt                                                                                     <  2:689492/89‑1 (MQ=255)

       cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt                                                                                     >  1:1722162/1‑91 (MQ=255)

       cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt                                                                                     <  1:3477790/91‑1 (MQ=255)

       cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt                                                                                     <  1:2357971/91‑1 (MQ=255)

        tCCAAGATTATGACAACATAACAAAGAACCACGCATCCCGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta                                                                                    >  1:1832150/1‑91 (MQ=255)

         ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat                                                                                   <  1:1955144/91‑1 (MQ=255)

         ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat                                                                                   <  1:2500034/91‑1 (MQ=255)

           aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc                                                                                 <  2:136314/91‑1 (MQ=255)

           aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc                                                                                 <  1:88046/91‑1 (MQ=255)

           aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc                                                                                 <  1:2417948/91‑1 (MQ=255)

            taaatgaagaataatcaaatagaaccacgtatcatgttttagtatggcgatgaagccatatacatgatacgtggttctATTTGATTAttct                                                                                >  1:172819‑M2/79‑91 (MQ=255)

               ttATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa                                                                             <  1:3096273/91‑1 (MQ=255)

               ttATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGCTCTATTTGATTATTCTTCa                                                                             <  1:1349104/91‑1 (MQ=255)

                  tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt                                                                          >  2:257474/1‑91 (MQ=255)

                  tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt                                                                          <  2:2347244/91‑1 (MQ=255)

                     caacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtata                                                                       <  2:2882536/91‑1 (MQ=255)

                      aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa                                                                      <  1:2247371/91‑1 (MQ=255)

                        caTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa                                                                    <  2:3166775/91‑1 (MQ=255)

                        caTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa                                                                    <  2:2565934/91‑1 (MQ=255)

                          tcaaatagaaccacgtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACAtt                                                                  >  1:3255717‑M2/65‑91 (MQ=255)

                           aaCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt                                                                 <  2:2125313/91‑1 (MQ=255)

                            aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa                                                                >  2:3765312/1‑91 (MQ=255)

                             cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa                                                               >  2:2930014/1‑91 (MQ=255)

                               aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                             <  1:1482842/91‑1 (MQ=255)

                               aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                             >  2:1057817/1‑91 (MQ=255)

                                AGAACCACGCATCATGTATATGGCTTCATCGCCATACCAACACATGATACGTGGTTCTATTTGATTCATCTTCATTTATAACATTTAAGaa                                                            <  2:3605365‑M1/91‑1 (MQ=255)

                                 GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa                                                           <  1:1166805‑M1/91‑1 (MQ=255)

                                 GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa                                                           <  2:1053403‑M1/91‑1 (MQ=255)

                                  AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc                                                          <  1:3431910‑M1/91‑1 (MQ=255)

                                  AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc                                                          <  2:3013678‑M1/91‑1 (MQ=255)

                                     CACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTc                                                       >  2:1493949‑M1/1‑91 (MQ=255)

                                      ACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt                                                      <  1:1657997‑M1/91‑1 (MQ=255)

                                       cgtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                                     >  1:3444507‑M2/52‑91 (MQ=255)

                                        GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa                                                    >  2:263820‑M1/1‑91 (MQ=255)

                                        GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa                                                    <  2:3508393‑M1/91‑1 (MQ=255)

                                         tatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTaa                                                   >  2:1193490‑M2/50‑91 (MQ=255)

                                           tcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAtt                                                 >  1:1055142/1‑91 (MQ=255)

                                           tcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAtt                                                 >  1:3783865/1‑91 (MQ=255)

                                             atGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                               >  1:2887793/1‑91 (MQ=255)

                                              tGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt                                              >  1:2790089/1‑91 (MQ=255)

                                               gttttagtatggcgatgaagccatatacatgatacgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  2:2780541‑M2/44‑91 (MQ=255)

                                               gTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             <  1:804562/91‑1 (MQ=255)

                                               gTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  2:1229946/1‑91 (MQ=255)

                                                   atGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtt                                         >  2:3759623/1‑91 (MQ=255)

                                                     ggCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtttt                                       >  1:1001437/1‑91 (MQ=255)

                                                       cTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCg                                     >  1:2459684/1‑91 (MQ=255)

                                                        ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                                    <  1:3741142/91‑1 (MQ=255)

                                                        ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                                    <  2:2855370/91‑1 (MQ=255)

                                                        ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                                    <  1:2876717/91‑1 (MQ=255)

                                                        ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                                    >  2:2424283/1‑91 (MQ=255)

                                                        tggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                                    <  2:3255717‑M2/57‑1 (MQ=255)

                                                         tCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa                                   <  1:959871/91‑1 (MQ=255)

                                                         tCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATCCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa                                   >  2:937790/1‑91 (MQ=255)

                                                          cATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGAc                                  >  2:1998129/1‑91 (MQ=255)

                                                             cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAt                               >  2:2091980/1‑91 (MQ=255)

                                                             cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAt                               <  1:1535901/91‑1 (MQ=255)

                                                             cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAt                               <  1:2203677/91‑1 (MQ=255)

                                                              gCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAtt                              >  1:776371/1‑91 (MQ=255)

                                                              gCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAtt                              >  1:1449712/1‑91 (MQ=255)

                                                                cATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGa                            <  1:354028/91‑1 (MQ=255)

                                                                cATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGa                            <  1:3246149/91‑1 (MQ=255)

                                                                cATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGa                            <  2:3431910/91‑1 (MQ=255)

                                                                cATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTACGGACGATTGa                            >  1:3514505/1‑91 (MQ=255)

                                                                  tACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAAc                          <  2:632162/91‑1 (MQ=255)

                                                                   aCTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACa                         >  1:367368/1‑91 (MQ=255)

                                                                    cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt                        <  1:59308/91‑1 (MQ=255)

                                                                    cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt                        <  2:2691189/91‑1 (MQ=255)

                                                                     tAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc                       <  2:1717481/91‑1 (MQ=255)

                                                                     tAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc                       >  2:840506/1‑91 (MQ=255)

                                                                     tAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc                       <  1:1565181/91‑1 (MQ=255)

                                                                     tAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc                       >  2:2276992/1‑91 (MQ=255)

                                                                        aaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATctct                    >  2:168485/1‑91 (MQ=255)

                                                                        aaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATctct                    >  1:3651678/1‑91 (MQ=255)

                                                                        aaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATctct                    <  1:2019552/91‑1 (MQ=255)

                                                                         aCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtctt                   >  2:598392/1‑91 (MQ=255)

                                                                              aTACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGa              <  2:869640/91‑1 (MQ=255)

                                                                               tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGat             >  2:3859456/1‑90 (MQ=255)

                                                                               tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg             <  2:526322/91‑1 (MQ=255)

                                                                                aCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGc            >  2:2916338/1‑91 (MQ=255)

                                                                                 cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGcc           <  1:2633949‑M2/82‑1 (MQ=255)

                                                                                  gtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGccc          <  2:409902‑M2/83‑1 (MQ=255)

                                                                                   tggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGcccc         <  1:532346‑M2/84‑1 (MQ=255)

                                                                                   tggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGcccc         <  2:1568614‑M2/84‑1 (MQ=255)

                                                                                    ggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAgcccca        >  2:3855631‑M2/7‑90 (MQ=255)

                                                                                      ttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTg      <  1:1215544‑M2/87‑1 (MQ=255)

                                                                                        ctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGtt    >  1:1409139‑M2/3‑91 (MQ=255)

                                                                                        ctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGtt    <  2:2180050‑M2/89‑1 (MQ=255)

                                                                                         tATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGGCGATTGAACATCTCTTCTGGAGCCCCTTGTTc   <  1:1115456‑M2/90‑1 (MQ=255)

                                                                                         tATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTc   >  1:3834574‑M2/2‑91 (MQ=255)

                                                                                         tATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTc   <  1:3119920‑M2/90‑1 (MQ=255)

AATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTCT  >  USA300TCH1516_ALE/2533505‑2533685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.