| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2533537 = | 156 (0.820) | 25 (0.150) | 17/142 | NT | 14.7% | intergenic (+33/+64) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 2533595 = | 153 (0.910) | intergenic (+91/+6) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 300 total aligned reads displayed.
GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAA > USA300TCH1516_ALE/2533447‑2533627 | gaacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttatcaatgaagaataatcaaata < 2:1241874‑M1/1‑1 (MQ=255)gaacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaata < 1:1115413‑M1/1‑1 (MQ=255)gaacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaata > 2:3853624‑M1/91‑91 (MQ=255)gaacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaata < 1:1336392‑M1/1‑1 (MQ=255)gaacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaata > 1:3834574‑M1/91‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAACTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:801209‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:136314‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGAAAACATAACAAAG > 2:3231997‑M1/1‑91 (MQ=255) aacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAg < 2:3622322‑M1/2‑1 (MQ=255) cTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTGGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGA < 2:3186830‑M1/91‑1 (MQ=255) caaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGaa < 1:1215544‑M1/4‑1 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:207993‑M1/91‑1 (MQ=255) cAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA < 2:2941296‑M1/91‑1 (MQ=255) gggctccagaagagatgttcaatcgtccgaaaacagaagaattgagacgtgtcttaaatgttataaatgaagaataatcaaatAGAACCAc > 2:3602970‑M1/84‑91 (MQ=255) gggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCAc > 2:2905201‑M1/84‑91 (MQ=255) aaaCCATTACTATATAAGGTACAAACGTACTTAAATCATAAGCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:1400166‑M1/91‑1 (MQ=255) aaaCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 2:2972423‑M1/91‑1 (MQ=255) ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg > 2:2571506‑M1/83‑91 (MQ=255) ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg < 1:240189‑M1/9‑1 (MQ=255) ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg < 1:2633949‑M1/9‑1 (MQ=255) aaCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG < 2:3485048‑M1/91‑1 (MQ=255) aCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGc > 2:2005704/1‑91 (MQ=255) aCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGc < 2:3340485/91‑1 (MQ=255) ccATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGca > 2:2285360/1‑91 (MQ=255) aTTACTATATAAAGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatc > 1:2979054/1‑91 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca > 2:950145/1‑91 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca < 1:3668206/91‑1 (MQ=255) tACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatcat < 2:1872341/91‑1 (MQ=255) aCTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATg > 2:1733252/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 1:1582987/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta < 2:2735716/91‑1 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 1:3622322/1‑91 (MQ=255) atataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGtat > 1:443582/1‑91 (MQ=255) ataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTatat > 1:2010963/1‑91 (MQ=255) ggTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGGCAACATAACAAAGAACCACGCATCATGTATATGGCt < 1:3713867/91‑1 (MQ=255) ggTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCt < 1:218647/91‑1 (MQ=255) ggTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCt > 1:1192896/1‑91 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCtt > 2:758117/1‑91 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCAt > 1:1651816/1‑91 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCAt < 1:3737519/91‑1 (MQ=255) aaaCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATc > 1:1760288/1‑91 (MQ=255) aaCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCg < 2:2232379/91‑1 (MQ=255) aCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGc > 1:417890/1‑91 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:3453508/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:657276/91‑1 (MQ=255) ccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCa < 2:3255717‑M1/34‑1 (MQ=255) aCTTTAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc < 1:31773/79‑1 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 1:3250349/1‑91 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 2:1565181/1‑91 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa < 2:1077572/91‑1 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 2:1115413/1‑91 (MQ=255) aaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaaa > 2:2876752/1‑91 (MQ=255) aTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaaaa < 2:3424548/91‑1 (MQ=255) tCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc < 1:2692935/91‑1 (MQ=255) gaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGTATCATGTATATGGCTTCATCGCCATACTAAAAc > 2:2780792‑M1/49‑91 (MQ=255) cATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa > 1:3545879/1‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:1413393‑M1/47‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 2:3720306‑M1/47‑91 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt < 1:1901224/91‑1 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 2:3800758/1‑91 (MQ=255) ttaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATa > 2:1193490‑M1/43‑91 (MQ=255) cgtcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgc < 1:2156244‑M1/91‑42 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt < 1:905910‑M2/91‑4 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt > 1:823463‑M2/1‑88 (MQ=255) agacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGt > 1:3489437‑M1/40‑91 (MQ=255) gacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTg > 1:34341‑M1/39‑91 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtgg > 2:2205367‑M2/1‑86 (MQ=255) gtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGtt > 2:410751‑M1/36‑91 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATACCAAAGAACCACGCATCATGTATATGGCTTCATCGCCCTACTAAACCATGATAcgtgggtc < 1:532798‑M2/91‑9 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttc < 2:543373‑M1/91‑49 (MQ=255) aaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtattatgttttagtatggcgatgaagccatatacatgatgcgtggttct < 2:306654‑M1/91‑50 (MQ=255) aaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttct < 2:3459054‑M2/91‑10 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg < 2:2042260/91‑1 (MQ=255) cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa < 1:847999/91‑1 (MQ=255) aatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa > 1:2873226‑M1/28‑91 (MQ=255) gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat > 1:1493949/1‑91 (MQ=255) tCCAAGATTATGACAACATAACAAAGAACCACGCATCCCGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta > 1:1832150/1‑91 (MQ=255) tCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta < 1:3195520/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:1955144/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGCGGTTCTATTTGattat < 1:1043543/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:88046/91‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta < 1:2457562/86‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt > 1:2768013/1‑91 (MQ=255) ttATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa < 1:3096273/91‑1 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:579544/1‑91 (MQ=255) gaagcataatcaagtAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtt > 2:635086‑M1/16‑91 (MQ=255) aTGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtt > 1:2301631/1‑91 (MQ=255) tGACAACATAACAATGAACCACGCGTCATTTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 2:1060441/91‑1 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 2:2347244/91‑1 (MQ=255) gACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta > 2:307974/1‑91 (MQ=255) agaataatcaaatAGAACCACGTATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta > 1:172819‑M1/14‑91 (MQ=255) caTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa < 2:3166775/91‑1 (MQ=255) aaCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 2:2125313/91‑1 (MQ=255) aaCAAAGAACCAAGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 1:1692033/91‑1 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 2:3765312/1‑91 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa < 2:1667071/91‑1 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 1:3133778/91‑1 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 2:899130/91‑1 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa < 1:1482842/91‑1 (MQ=255) aGAACCAGGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattt < 2:3459025‑M1/91‑83 (MQ=255) | GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAA > USA300TCH1516_ALE/2533447‑2533627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |