| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2552493 = | 205 (1.080) | 8 (0.050) | 8/140 | NT | 4.3% | coding (749/1734 nt) | USA300HOU_RS13150 | putative ABC transporter ATP‑binding protein |
| ? | USA300TCH1516_ALE | 2552527 = | 180 (1.080) | coding (715/1734 nt) | USA300HOU_RS13150 | putative ABC transporter ATP‑binding protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2552592‑2552493‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattgcatttCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTACTT > USA300TCH1516_ALE/2552527‑2552616 AAAATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTT > 2:2111848/1‑91 AAATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTA < 2:815961/91‑1 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAATAATAGAAATGCAATATATCCCATTCAATTTAT < 2:3803710/91‑1 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTAT > 2:3106447/1‑91 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTAT < 2:2006287/91‑1 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTAT < 2:2006010/91‑1 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTAT > 2:236951/1‑91 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTAT > 1:3352693/1‑91 AATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTAT < 1:2901812/91‑1 ATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATT > 1:2777049/1‑91 ATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATT > 1:2777164/1‑91 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACCAAAATAGAAATGCAATATATCCCATTCAATTTATTa > 2:3838497/1‑90 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG < 1:2407578/91‑1 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG < 2:1035793/91‑1 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG < 2:1072769/91‑1 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG > 2:2470454/1‑91 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG > 2:316853/1‑91 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG > 2:1490981/1‑91 TACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTG > 2:316902/1‑91 ACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGC > 2:2299283/1‑91 ACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGC > 1:2651342/1‑91 ACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGC > 1:2947140/1‑91 ACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGC < 2:1855062/91‑1 GAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACCAAAATAGAAATGCAATATATCCCATTCAATTTATTGCAT > 2:3449639/1‑91 GAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCAT < 2:2268679/91‑1 GAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCAT < 1:3669892/91‑1 AGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATT < 2:1094851/91‑1 AGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATT < 2:2905/91‑1 GTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATTT < 1:799018/91‑1 ACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAA > 1:547095/1‑91 AAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACT > 1:2638345/1‑91 AGAAATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGT > 1:1682391/1‑78 AGAAATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGT < 2:1682391/78‑1 GAAATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGA > 1:452258/1‑91 AAATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGAC > 1:2460039/1‑91 AATGCAATATATCCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACT > 1:904014/1‑91 CCCATTCAATTTATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTT > 1:706215/1‑91 tgcaATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATG > 1:3679803/5‑91 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT > 2:860278/1‑91 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 1:726783/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:2115111/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:639934/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 1:2555439/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 1:2830898/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:1672333/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:1672318/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 1:2322289/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:1343329/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:1277374/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:2395345/91‑1 TATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATT > 2:3787693/1‑91 TATTGCATTTCTAATTTTGTATTTATACGTTTACTTTCATTGACTGCTTGCTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGAct > 2:860410/1‑89 TATTGCATTGCTAGTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAGCTTTTAAGACTCGTATTTTCTTTCGCGAATGATT < 2:1239211/91‑1 ATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTT < 1:1175449/91‑1 TTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTT > 2:178476/1‑91 TGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTA < 1:1457433/91‑1 TGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTA < 2:1088795/91‑1 TGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTA < 2:2662132/91‑1 GCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTAT < 2:18092/91‑1 GCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTAT > 1:1638265/1‑91 GCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTAT > 2:286043/1‑91 GCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTAT > 2:1697028/1‑91 GCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTGTCGCGAATGATTTTAT > 2:2976166/1‑91 GCATTTCTAGTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTAT > 1:1950178/1‑91 CATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAATACTTTTAAGCCTCGTATTTTCTTTCGCGCATGATTTTATT > 2:1027739/1‑91 CATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATT > 1:2362611/1‑91 ATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTA > 1:2599677/1‑91 ATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTA > 2:3311359/1‑91 ATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTA > 2:3311487/1‑91 ATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTA < 2:706215/91‑1 TTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTAC > 1:1603428/1‑91 TTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTAC < 2:2028125/91‑1 TTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTACT < 1:318769/91‑1 TCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTACTT < 1:506574/91‑1 TCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTACTT < 1:1799787/91‑1 TCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTACTT < 1:1478942/91‑1 AAAATACGAGTCTTAAAAGTTTTAACCAAGCAGTCAATGAAAGTAAACGTATAAATACAAAAATAGAAATGCAATATATCCCATTCAATTTATTGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2552592‑2552493‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattgcatttCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGACTCGTATTTTCTTTCGCGAATGATTTTATTACTT > USA300TCH1516_ALE/2552527‑2552616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |