| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2552493 = | 205 (1.080) | 8 (0.050) | 8/140 | NT | 4.3% | coding (749/1734 nt) | USA300HOU_RS13150 | putative ABC transporter ATP‑binding protein |
| ? | USA300TCH1516_ALE | 2552527 = | 180 (1.080) | coding (715/1734 nt) | USA300HOU_RS13150 | putative ABC transporter ATP‑binding protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 268 total aligned reads displayed.
ATAATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGAC > USA300TCH1516_ALE/2552403‑2552583 | aagtaataaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaataga < 1:506574‑M1/1‑1 (MQ=255) taataaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAAt < 2:706215‑M1/4‑1 (MQ=255) taataaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAAt > 1:2599677‑M1/88‑91 (MQ=255) taataaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAAt > 2:3311487‑M1/88‑91 (MQ=255) taaGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATg > 1:461177/1‑91 (MQ=255) aataaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATg > 1:2362611‑M1/87‑91 (MQ=255) ataaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGc > 1:1638265‑M1/86‑91 (MQ=255) taaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCa < 1:1457433‑M1/7‑1 (MQ=255) aaaatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCaa > 2:178476‑M1/84‑91 (MQ=255) gtaggtaAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATa < 1:2032047/91‑1 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATa > 2:860278‑M1/82‑91 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATa < 2:2395345‑M1/10‑1 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATa < 1:2830898‑M1/10‑1 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATa < 2:2115111‑M1/10‑1 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATa < 2:639934‑M1/10‑1 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATa < 2:1672318‑M1/10‑1 (MQ=255) aatcattcgcgaaagaaaatacgagtcttaaaagctttaaccaagcagtcaatgaaagtaaacgtataaatacaaaactagCAATGCAATa < 2:1239211‑M1/10‑1 (MQ=255) taggtaAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATaa < 2:2859124/91‑1 (MQ=255) ggtaAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAAt > 2:3747207/1‑91 (MQ=255) ggtaAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAAt < 1:1029975/91‑1 (MQ=255) ggtaAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAAt < 1:1475859/91‑1 (MQ=255) aTCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCaa < 1:1937865/81‑1 (MQ=255) tCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATg > 1:811242/1‑91 (MQ=255) aTACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGa > 2:1393006/1‑91 (MQ=255) tACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGat > 2:2357076/1‑91 (MQ=255) tATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGatata < 1:1679630/91‑1 (MQ=255) gATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTg < 1:1326755/91‑1 (MQ=255) ttCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCa > 2:128751/1‑91 (MQ=255) ttCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCa > 2:318769/1‑91 (MQ=255) tCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCAt > 2:2242525/1‑91 (MQ=255) cATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCAtt < 2:3789249/91‑1 (MQ=255) gtcttaaaagttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATAAATTGAATGGGATATATTGCAttt > 1:2460039‑M1/58‑91 (MQ=255) atatatAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCAttt < 1:1139527/91‑1 (MQ=255) atatatAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCAttt < 2:3364912/91‑1 (MQ=255) atatatAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCAttt > 1:317960/1‑91 (MQ=255) tatataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTc > 1:3739559/1‑91 (MQ=255) tatataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTc > 2:2555439/1‑91 (MQ=255) tataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCAttctat > 2:1818946/1‑87 (MQ=255) tataATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATCTCTa > 1:3228267/1‑91 (MQ=255) ataataAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTAt > 2:1924657/1‑91 (MQ=255) ataataAGCATGCAACTAATACAATCATTATTGAAACAACTGTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTAt < 1:1184128/91‑1 (MQ=255) taataaGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTAtt > 1:1960677/1‑91 (MQ=255) agttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATAAATTGAATGGGATATATTGCATTTCTAttttt > 1:2638345‑M1/50‑91 (MQ=255) aaGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTg < 1:1797375/91‑1 (MQ=255) ttttaaccaagcagtcaatgaaagtaaacgtataaatacaaaaatagAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGt > 1:547095‑M1/48‑91 (MQ=255) gCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTa > 2:2733043/1‑91 (MQ=255) cATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAt > 2:3690211/1‑91 (MQ=255) cATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAt < 2:3572200/91‑1 (MQ=255) aTGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAtt > 2:2072372/1‑91 (MQ=255) aTGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAtt < 2:1069360/91‑1 (MQ=255) tGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTAttt < 1:3532920/91‑1 (MQ=255) cAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTtat > 2:1109674/1‑91 (MQ=255) aaCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTAAATGGGATATATTGCATTTCTATTTTTGTATTtata < 2:3273381/91‑1 (MQ=255) aCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATAc < 2:408567/91‑1 (MQ=255) aCTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATAc < 2:2389965/91‑1 (MQ=255) cTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACg < 1:860958/91‑1 (MQ=255) tAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTGGTATTTATACGt < 1:3002600/91‑1 (MQ=255) aaTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGtt < 1:165607/91‑1 (MQ=255) aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt < 2:2798240/91‑1 (MQ=255) aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt < 2:3286717/91‑1 (MQ=255) aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt < 2:3003736/91‑1 (MQ=255) aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt < 2:2924175/91‑1 (MQ=255) aTACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGttt > 1:2299283/1‑91 (MQ=255) tACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTa > 2:3650146/1‑91 (MQ=255) tACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTa > 2:1664980/1‑91 (MQ=255) aCAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTAc < 1:84383/91‑1 (MQ=255) aCAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTAc > 2:126332/1‑91 (MQ=255) tCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTc < 2:3105469/91‑1 (MQ=255) cATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTTTACGTTTACTTTCa > 2:1686471/1‑91 (MQ=255) ttattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCAtt > 1:3518647/1‑91 (MQ=255) ttattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCAtt < 1:3270023/91‑1 (MQ=255) ttattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCAtt < 2:1974728/91‑1 (MQ=255) tattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTg < 2:731630/91‑1 (MQ=255) tattGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTg < 2:604770/91‑1 (MQ=255) attGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGa > 1:927346/1‑91 (MQ=255) ttGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGAc < 1:797425/91‑1 (MQ=255) ttGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGAc < 2:1566223/91‑1 (MQ=255) acaacTTTTAAACTAAGTAAATGCAATAAATCGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCtt > 2:2969335/1‑91 (MQ=255) acTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGt < 1:368221/91‑1 (MQ=255) ttttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTa < 1:2524559/91‑1 (MQ=255) ttttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTa < 2:530089/91‑1 (MQ=255) ttttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTa < 1:2473838/91‑1 (MQ=255) tttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaa < 2:701737/91‑1 (MQ=255) tttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaa < 1:554198/91‑1 (MQ=255) tttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaa < 1:719543/91‑1 (MQ=255) ttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaa > 2:1166194/1‑91 (MQ=255) ttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaa < 1:2587602/91‑1 (MQ=255) ttAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaa > 2:1079249/1‑91 (MQ=255) tAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaaa > 2:1803468/1‑91 (MQ=255) tAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTaaaa > 1:198685/1‑91 (MQ=255) aaaCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAAc > 1:2215414/1‑91 (MQ=255) aaCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACt < 1:15549/91‑1 (MQ=255) aCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtt < 1:3831805/91‑1 (MQ=255) aCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtt > 1:1390407/1‑91 (MQ=255) aCTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtt > 2:802972/1‑91 (MQ=255) cTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACttt < 1:2988420/91‑1 (MQ=255) tAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACtttt > 1:699906/1‑91 (MQ=255) aaGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTa > 1:1308083/1‑91 (MQ=255) tAAGTGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGa < 1:3055504/91‑1 (MQ=255) tAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGa > 1:1716043/1‑91 (MQ=255) | ATAATAAGGGTAGGTAAATCAATACTATGATTCATATATAATAAGCATGCAACTAATACAATCATTATTGAAACAACTTTTAAACTAAGTAAATGCAATAAATTGAATGGGATATATTGCATTTCTATTTTTGTATTTATACGTTTACTTTCATTGACTGCTTGGTTAAAACTTTTAAGAC > USA300TCH1516_ALE/2552403‑2552583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |