| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2573677 = | 160 (0.840) | 19 (0.120) | 11/138 | NT | 13.1% | intergenic (‑203/+91) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD |
| ? | USA300TCH1516_ALE | 2573715 = | 115 (0.700) | intergenic (‑241/+53) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD | |||||
TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA > USA300TCH1516_ALE/2573715‑2573804 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT < 1:238134/91‑1TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT < 1:1360678/91‑1TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT < 1:1360853/91‑1 AATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTT > 2:507354/1‑91 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG < 2:3594044/91‑1 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG < 2:3594068/91‑1 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG < 2:1581054/91‑1 ATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTG < 1:489968/91‑1 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA < 2:2517627/91‑1 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA < 2:403657/91‑1 ATGTATTAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 2:3144241/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:1564050/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 2:312639/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:1672582/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 1:2383577/91‑1 ATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAG < 2:2853351/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 2:1823505/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 2:1507671/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA < 1:2172050/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA < 2:3427291/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 1:795186/1‑91 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC > 1:2790633/1‑91 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 2:2857061/91‑1 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT < 2:102515/91‑1 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT < 1:3553401/91‑1 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT < 1:5547/91‑1 AGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTattt > 1:1626072/1‑87 TTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCCCATTTTTTATAAATCATGAAACGAAATCGCTAA > 1:3181634/1‑91 AAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC‑‑‑‑TTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCT > 2:1563996/1‑91 AAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCT > 1:2800506/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:3343349/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:630216/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:1312473/1‑91 CTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTA > 1:1607076/1‑91 ACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACA > 1:2330899/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:2824199/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:2824179/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 2:588347/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 2:671740/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 2:1793024/1‑91 AGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTA > 1:732178/1‑91 AGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTA > 2:332861/1‑91 AGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTA > 2:3098289/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 2:2158208/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 1:1100122/1‑91 GCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATAC > 2:2242847/1‑91 TTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATG > 2:1517909/1‑91 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA > 1:1927720/1‑91 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA > 1:1077368/1‑91 TGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGA > 1:353796/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:1746270/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT > 2:1577235/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:3494911/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:398503/91‑1 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 2:2852529/91‑1 GAGTAGCCTCACTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT < 1:3523054/91‑1 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA > 2:423925/1‑91 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA < 2:5547/91‑1 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 2:2776951/1‑91 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 2:3793426/1‑91 TAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAG > 2:207628/1‑91 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTTCGGCCGATGATTAGA > 2:1261354/1‑91 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGA > 2:1261753/1‑91 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGA < 2:2529834/91‑1 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGA < 2:2529450/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:2365587/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT > 1:3760916/1‑91 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:2365599/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 1:432094/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT < 2:1316365/91‑1 GCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGAT > 2:1448826/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:3181935/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:2259360/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 2:2259320/1‑91 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT < 1:1394346/91‑1 CCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT < 1:1394054/91‑1 CTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTG > 2:827422/1‑91 TCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA < 2:3758308/91‑1 TCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA > 2:950360/1‑91 TCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA > 2:950518/1‑91 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTGA > USA300TCH1516_ALE/2573715‑2573804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |